Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120534.Seq
         (652 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    23   6.3  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   8.4  

>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +2

Query: 143 CCLKKQPPPVLYRLLTILPVLFYCNFLINFTL---KITHRLSAFFPS 274
           C +   P  +LYR  +    LF    LI+FTL    + + L+   PS
Sbjct: 481 CLVNSNPSAILYRA-SRSKSLFMSTLLISFTLALVPVVYALAEIVPS 526


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -2

Query: 201 TGKIVNSLYKTGGGCFFKQ---HILVDVV 124
           TG+ V  LY    GC  +Q   H+L++++
Sbjct: 601 TGRFVKELYDVRSGCVQEQDGTHLLMNLI 629


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 593,944
Number of Sequences: 2352
Number of extensions: 10907
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)