Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120534.Seq
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69661-3|CAA93490.1|  293|Caenorhabditis elegans Hypothetical pr...    31   0.71 
Z49912-1|CAA90140.1|  588|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>Z69661-3|CAA93490.1|  293|Caenorhabditis elegans Hypothetical
           protein F48F7.5 protein.
          Length = 293

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
 Frame = -2

Query: 252 RCVIFNVKFIKKLQ*NRTGKIVNSLYKTGG--GCFFKQHILVDVVVKIKF--LFRPVCS* 85
           RC  FN +F K    N TG + N+L  +    G  F+Q++L + ++KIK   L +P    
Sbjct: 112 RCRRFNYQFSKFA--NHTGALFNNLMHSNEQLGTLFQQYVLDEHIIKIKTGRLSKPATEE 169

Query: 84  MADIKS 67
           + +I+S
Sbjct: 170 VPNIES 175


>Z49912-1|CAA90140.1|  588|Caenorhabditis elegans Hypothetical
           protein T24F1.2 protein.
          Length = 588

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 182 LLTILPVLFYCNFLINFTLKITHRLSAF 265
           L  ILP ++  +F+INF +  TH ++AF
Sbjct: 248 LQDILPEVYKYSFVINFLIFTTHLIAAF 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,064,355
Number of Sequences: 27780
Number of extensions: 246824
Number of successful extensions: 611
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)