Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120534.Seq
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.48 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   5.9  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +2

Query: 65  RDFMSAIQLHTGLKRNLILTTTSTKICCLKKQPPPVLYRLLTILPVLFYCN 217
           R     I + TGL R    T     +   K  P   L ++  +L   FY N
Sbjct: 193 RQCFQTIMMRTGLSRQAEYTDFLKSVPIFKNLPEETLIKISDVLEETFYNN 243


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 417 KRCHQSNNVTVQYKNNDEFVTICNNLENN 503
           K  H +NN    Y NN+      NN  NN
Sbjct: 321 KTIHNNNNYKYNYNNNNYNNNNYNNNYNN 349


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 177 YKTGGGCFFKQHILVDVVVKIKFLF 103
           YK GGG F   + L  V+  I   F
Sbjct: 12  YKNGGGAFLIPYFLTLVLAGIPMFF 36


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 587 RGLSSFNKSNGLAYHRYHR 531
           + L      +G+AYHR HR
Sbjct: 148 KNLGGTTLHHGMAYHRGHR 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,152
Number of Sequences: 438
Number of extensions: 3363
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)