Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120534.Seq
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46460.1 68418.m05722 pentatricopeptide (PPR) repeat-containi...    29   3.5  
At2g33580.1 68415.m04115 protein kinase family protein / peptido...    29   3.5  
At1g58807.1 68414.m06660 disease resistance protein (CC-NBS-LRR ...    28   6.2  
At1g58410.1 68414.m06645 disease resistance protein (CC-NBS-LRR ...    28   6.2  
At1g59218.1 68414.m06674 disease resistance protein (CC-NBS-LRR ...    27   8.2  
At1g58848.1 68414.m06661 disease resistance protein (CC-NBS-LRR ...    27   8.2  

>At5g46460.1 68418.m05722 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 697

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = +3

Query: 411 IKKRCHQSNNVTVQYKNNDEFVTICNNLENNR 506
           I  +C++S +VTV+++N +  V ICN+L + R
Sbjct: 21  IHGKCYRSFSVTVEFQNRE--VLICNHLLSRR 50


>At2g33580.1 68415.m04115 protein kinase family protein /
           peptidoglycan-binding LysM domain-containing protein
           protein kinase [Arabidopsis thaliana] GI:2852449;
           contains Pfam profiles PF01476: LysM domain, PF00069:
           Protein kinase domain
          Length = 664

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 266 RMLRADV*SSM*NLLKSCNKTGRVKLSTVCIK 171
           ++++ DV SS  NLLK  N +  ++LS  CI+
Sbjct: 395 KVIKGDVSSSEINLLKKLNHSNIIRLSGFCIR 426


>At1g58807.1 68414.m06660 disease resistance protein (CC-NBS-LRR
           class), putative / PRM1 homolog, putative similar to
           disease resistance protein rpp8 [Arabidopsis thaliana]
           gi|3901294|gb|AAC78631; identical to cDNA RF45 mRNA for
           PRM1 homolog, partial cds GI:6520196
          Length = 1017

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 119 LTTTSTKICCLKKQPPPVLYRLL 187
           LT+ S   CCL+K P P L RL+
Sbjct: 867 LTSISLFFCCLEKDPLPTLGRLV 889


>At1g58410.1 68414.m06645 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 899

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 119 LTTTSTKICCLKKQPPPVLYRLLTILPV-LFYCNF 220
           LT      CCL++ P P+L +LL +  + L Y +F
Sbjct: 770 LTVLDLSYCCLEEDPMPILEKLLELKDLSLDYLSF 804


>At1g59218.1 68414.m06674 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1049

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 119 LTTTSTKICCLKKQPPPVLYRLLTI--LPVLF 208
           LT+ S   CCL++ P P L RL+ +  L +LF
Sbjct: 875 LTSISLFFCCLEEDPMPTLERLVHLKELQLLF 906


>At1g58848.1 68414.m06661 disease resistance protein (CC-NBS-LRR
           class), putative / PRM1 homolog, putative similar to
           disease resistance protein rpp8 [Arabidopsis thaliana]
           gi|3901294|gb|AAC78631;
          Length = 941

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 119 LTTTSTKICCLKKQPPPVLYRLLTI--LPVLF 208
           LT+ S   CCL++ P P L RL+ +  L +LF
Sbjct: 767 LTSISLFFCCLEEDPMPTLERLVHLKELQLLF 798


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,857,237
Number of Sequences: 28952
Number of extensions: 211091
Number of successful extensions: 455
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)