Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120533.Seq
         (667 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.9  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   5.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   5.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   5.2  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   6.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 375  ARRPPSGNIGKFENIYNWVVCAYLSWRW 292
            + +PP     K ++ Y  +VC + +W W
Sbjct: 1382 SEKPPLPEELKPQSGYFKIVCYFTNWAW 1409


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 414 RTSICTPNDRRAKARRPPSG 355
           ++S+C+P      +R  PSG
Sbjct: 146 KSSVCSPGSGHQDSRTSPSG 165


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 414 RTSICTPNDRRAKARRPPSG 355
           ++S+C+P      +R  PSG
Sbjct: 146 KSSVCSPGSGHQDSRTSPSG 165


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 414 RTSICTPNDRRAKARRPPSG 355
           ++S+C+P      +R  PSG
Sbjct: 146 KSSVCSPGSGHQDSRTSPSG 165


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 290 HVRLN-VDLHASRIKSLRLMRLKRCTSSFLIMPSIRSRNRVKWSKC 156
           H +L   D+    +K L+ ++ ++   S    PS+ S+ R  +S+C
Sbjct: 72  HSKLEKADILEMTVKHLQNLQRQQAAMSAATDPSVVSKFRAGFSEC 117


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,176
Number of Sequences: 336
Number of extensions: 3085
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)