Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120533.Seq
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    26   4.2  
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    25   7.4  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    25   7.4  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   7.4  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    25   7.4  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   9.8  

>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 323 GLFAHIYRGVGHVRLNVDLHASRIKSLRLMRLKRCTSSFL 204
           G+  H + GVG  R +VDL  S+IK     + K+C + +L
Sbjct: 375 GVTLHSFAGVGLARESVDLLVSKIK-----KNKKCVNRWL 409


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 154 PHFDHLTRLRDLIDGMIKNEDVQRFNRINR 243
           P FD+ T  R+ +D   +++  + FN INR
Sbjct: 130 PRFDYDTFYREELDKKHRDKSYRYFNNINR 159


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 661 VPQRERVFTEFELANFNLSNFYLQTTRRDSTKAQT 557
           VP+ +R   E  +   N   F  QTT+R S K  T
Sbjct: 96  VPRSQRFSRELNVKKENKKVFSSQTTKRQSRKQST 130


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 196 GMIKNEDVQRFNRINRNDLIRLACKSTFRR 285
           G +K ED+    RI +  ++RL+  S F+R
Sbjct: 481 GRLKGEDLVSIQRIFKKTILRLSAFSYFQR 510


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/59 (22%), Positives = 28/59 (47%)
 Frame = +1

Query: 49  IYYWIKLH*MKLTYKMVSLLKYALRLTREYKENIIPHFDHLTRLRDLIDGMIKNEDVQR 225
           I Y IKL   ++ ++        ++L+R Y   ++P      ++ D +  + KN+ + R
Sbjct: 89  IVYIIKLQDSEIHHRYSEFASLRVQLSRLYPTCLVPPLPDKHKIMDYLINVTKNQRMSR 147


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 18/78 (23%), Positives = 33/78 (42%)
 Frame = +3

Query: 348  QYCHLEADVPSPDDHSVYRYLCVACGTLLVIDHPLDVFGETEEGVNELFEVQRITPEGIC 527
            ++C  ++ +P  +D S      V C  L    +  D  G T   V +L  +  +      
Sbjct: 802  KFCFKDSTIPKSNDFSNITEYYVKCAMLESFPNIRDRKGVTPSSVKKL--LLDLLCYNDN 859

Query: 528  SNTTTSCSQFVCAFVESL 581
            +N   S + F+C  ++SL
Sbjct: 860  ANNEFSDAYFICLLIDSL 877


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,514
Number of Sequences: 5004
Number of extensions: 49666
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)