Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120533.Seq
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730...    31   1.1  
10_05_0055 - 8625420-8625737,8625835-8625988,8626202-8626439,862...    30   1.9  
09_04_0032 - 13953323-13955269                                         30   1.9  
01_06_0589 - 30446684-30446790,30446977-30447187,30447316-304473...    29   3.3  
10_05_0054 - 8611989-8612309,8612350-8612566,8613047-8613284,861...    28   5.8  
06_01_0030 - 296681-296789,296903-297105,297348-297426,297512-29...    28   5.8  
12_02_0123 - 13930138-13932471                                         28   7.7  
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     28   7.7  

>12_01_0797 +
           7300370-7300506,7300682-7300798,7301903-7302443,
           7302885-7304042,7304133-7304291,7304397-7304504,
           7305045-7305304,7305936-7306101,7307025-7307050,
           7307318-7307402,7307486-7307695,7308815-7308872,
           7308964-7309037,7309323-7309373,7309576-7309664,
           7310027-7310104,7310164-7310269
          Length = 1140

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
 Frame = -3

Query: 554 LRTTSSGVATNS-LRRYALHFK*FVDALLRFAKHVQRVVDNQQRAARNAQVSVHRMIVGR 378
           +R+T    + NS L+R   HFK   D ++RF +H +RVV++++    NA+    R  + R
Sbjct: 353 MRSTQLSESVNSELKR---HFKSDFD-IIRFLQHFERVVEDKRENELNAEFE-SRKKIPR 407

Query: 377 RHVGLQVAILANSKIYTIGLF 315
             +   + I A SK+YT  +F
Sbjct: 408 IKMRTPMLIQA-SKLYTPIIF 427


>10_05_0055 -
           8625420-8625737,8625835-8625988,8626202-8626439,
           8626610-8626820,8626909-8627033,8627451-8627570,
           8627749-8628625
          Length = 680

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -3

Query: 368 GLQVAILANSKIYTIGLFAHIYRGVGHVRLNVDLHASRIKSLRLMRLKRCT 216
           G + A + N  + T+G  A  Y  +GHV + +D+++  I  L ++  +R T
Sbjct: 510 GTKTASITNHVVGTLGYMAPEYAVLGHVSVKLDVYSFGILVLEIVTGRRNT 560


>09_04_0032 - 13953323-13955269
          Length = 648

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +1

Query: 91  KMVSLLKYALRLTREYKENIIPHFDHLTRLRDLIDGMIKNEDVQRFNRINR 243
           +M+ LLK A+  T +  E      +   R+  ++D +I+N DV  F+ +++
Sbjct: 598 EMMRLLKLAVECTEQRPERRPTMAEVAARIEHIVDTVIRNADVDDFDSVSQ 648


>01_06_0589 -
           30446684-30446790,30446977-30447187,30447316-30447399,
           30447550-30448593
          Length = 481

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = -3

Query: 299 GVGHVRLNVDLHASRIKSLRLMRLKRCTSSFLIMPSIRSRNRVKWSKCGIMFSL 138
           G+     ++D H S  K    ++L    SS ++  S +++ R  +  CG++ S+
Sbjct: 427 GMARALKDIDFHCSESKDWASLKLCETESSSIVQSSTKNKWRCSFVDCGLIRSV 480


>10_05_0054 -
           8611989-8612309,8612350-8612566,8613047-8613284,
           8613633-8613843,8613924-8614048,8615849-8615968,
           8617245-8618076
          Length = 687

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = -3

Query: 368 GLQVAILANSKIYTIGLFAHIYRGVGHVRLNVDLHASRIKSLRLMRLKRCTSSF 207
           G +   + +  + T+G  A  Y  +GH+ + VD+++  I  L ++  +R T  F
Sbjct: 495 GTKTTSITSQVVGTLGYMAPEYAVLGHLSVKVDVYSFGILVLEIVTGRRNTDVF 548


>06_01_0030 -
           296681-296789,296903-297105,297348-297426,297512-297877,
           298590-298956,299235-299373,299461-299731,299849-299958,
           300567-300704
          Length = 593

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 278 NVDLHASRIKSLRLMRLKRCTSSFLIMPSIRSRNRVKWSK-CGIMFSLYSRVKRSA 114
           N+D+H  +  S  +   +  +S + I+ S R  N   W+K  G+    YS  K  A
Sbjct: 262 NLDIHVGQSYSFLITMDQNASSDYYIVASARFVNESLWTKVTGVAILQYSNSKGKA 317


>12_02_0123 - 13930138-13932471
          Length = 777

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 9/41 (21%)
 Frame = +1

Query: 151 IPHFDHLTR---------LRDLIDGMIKNEDVQRFNRINRN 246
           +PHF H  R         LRD  D M KN D+Q F+RI  +
Sbjct: 676 MPHFTHSVRPYGDIFSVNLRDTTD-MAKNRDIQEFHRITHS 715


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 404 ILVRCVRHAAGYRPPVGRVWRN 469
           I+V  V +AAG+ PP G VW+N
Sbjct: 30  IMVATVTYAAGFNPP-GGVWQN 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,725,036
Number of Sequences: 37544
Number of extensions: 338052
Number of successful extensions: 888
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)