Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120533.Seq
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57140| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)                   30   1.5  
SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_44313| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_30923| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_42991| Best HMM Match : fn3 (HMM E-Value=7.2e-08)                   28   7.9  
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)              28   7.9  

>SB_57140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 369 DVPSPDDHSVYRYLCVACGTLLVIDHPLDVFG-ETEEGVNELFEVQRITPEGICSNTT 539
           ++  PD ++ YR+LC +  T+ + D    +FG +  + V EL EV R+      +N T
Sbjct: 48  ELMKPDVNNEYRHLCSSSSTVTITD---QLFGDDLAKKVKELTEVNRVGKRVTTTNPT 102


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 261  CMQINVQTYMPNATIDMRKQPNCIYFRICQYCHLEADVPSPDDHSVYRYLC 413
            CM   V  Y PN+T+ +   P+C    +C      +  P P+D S+  YLC
Sbjct: 2475 CMPCPVGQYCPNSTVSVGGPPDCHAGYVCTG---GSSTPEPNDPSM-GYLC 2521


>SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)
          Length = 909

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 388 IIRCTDTCALRAARCWLSTTRWTCLAKRRRASTNYLKCSA*RRREFV 528
           +I C   C LR   C LS  +  CL  +   + ++  C A   RE +
Sbjct: 28  VIACDSGCCLRMHECKLSEHKLVCLKAKTPCTNSFYGCPAVLPRESI 74


>SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1257

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/83 (27%), Positives = 32/83 (38%)
 Frame = +3

Query: 345 CQYCHLEADVPSPDDHSVYRYLCVACGTLLVIDHPLDVFGETEEGVNELFEVQRITPEGI 524
           C YCH E D      H    +    C T     +        +E   +    + ++   I
Sbjct: 23  CLYCHQETDCFGVYPHCCDGHCKKTCNTSCTTSNDCGSPNSLQE---KCCNGKCVSINTI 79

Query: 525 CSNTTTSCSQFVCAFVESLRVVC 593
           C NTTTS +Q   A +  L VVC
Sbjct: 80  CPNTTTSSTQLSPAIIAVL-VVC 101


>SB_44313| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 369 DVPSPDDHSVYRYLCVACGTLLVIDHPLDVFG-ETEEGVNELFEVQRITPEGICSNTT 539
           ++  PD ++ YR+LC +  T+ + D    +FG +  + V EL EV R+      +N T
Sbjct: 9   ELMKPDLNNEYRHLCSSSSTVTITD---QLFGDDLAKEVIELTEVNRVGKRVTTTNPT 63


>SB_30923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/71 (25%), Positives = 25/71 (35%)
 Frame = +1

Query: 325 IVYIFEFANIATWRPTCLRPTIIRCTDTCALRAARCWLSTTRWTCLAKRRRASTNYLKCS 504
           +V +  FA IAT  PT    TI  CT         C     +  C  K +       +CS
Sbjct: 347 MVQLAAFAKIATQEPTANYVTIDPCTSNPCQNGGTCMNDKGKAVCRCKGKWTGVTCRECS 406

Query: 505 A*RRREFVATP 537
             +  +    P
Sbjct: 407 CPKGNKAAVPP 417


>SB_42991| Best HMM Match : fn3 (HMM E-Value=7.2e-08)
          Length = 769

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 381 PDDHSVYRYLCVACGTLLVIDHPLDVFG-ETEEGVNELFEVQRITPEGICSNTT 539
           PD ++ YR+LC +   + + D    +FG +  + V EL EV R+      +N T
Sbjct: 3   PDLNNEYRHLCSSSSNVTITD---QLFGDDLAKEVKELTEVNRVGKRVTTTNPT 53


>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
          Length = 1069

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 390 HSVYRYLCVACGTLLVIDHPLDVFGETEEGVNELFEVQRITPEGICSNTTTSC 548
           +S  R + V    LL   +P  V G  ++GVN+L + +R+  +G+ +   T C
Sbjct: 276 NSKLREILVRQDDLLKTSNPQQVLGAIQDGVNDLVD-KRVEEKGV-NTVQTGC 326


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,587,805
Number of Sequences: 59808
Number of extensions: 396781
Number of successful extensions: 1119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)