Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120533.Seq
         (667 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y07829-1|CAB52384.1|  481|Homo sapiens RING finger protein protein.    31   2.8  
AF220122-1|AAG53495.1|  482|Homo sapiens tripartite motif protei...    31   2.8  
U97145-1|AAC51647.1|  464|Homo sapiens RET ligand 2 protein.           31   4.9  
U93703-1|AAB61922.1|  464|Homo sapiens glial cell line-derived n...    31   4.9  
BC041688-1|AAH41688.1|  464|Homo sapiens GDNF family receptor al...    31   4.9  
AY941828-1|AAX46325.1|  359|Homo sapiens glial cell line-derived...    31   4.9  
AY326396-1|AAP88378.1|  331|Homo sapiens glial cell line-derived...    31   4.9  
AF002700-1|AAC52036.1|  464|Homo sapiens GDNF family receptor al...    31   4.9  
BX005441-5|CAM26238.1|  481|Homo sapiens tripartite motif-contai...    30   6.5  
BA000025-88|BAB63332.1|  481|Homo sapiens RNF9 protein.                30   6.5  
AL844220-2|CAI18610.1|  481|Homo sapiens tripartite motif-contai...    30   6.5  
AL671859-11|CAI17587.1|  481|Homo sapiens tripartite motif-conta...    30   6.5  
AL669914-11|CAI18188.1|  481|Homo sapiens tripartite motif-conta...    30   6.5  
AB202085-1|BAE78605.1|  481|Homo sapiens tripartite motif-contai...    30   6.5  
AB103595-1|BAF31256.1|  481|Homo sapiens Zn-finger protein protein.    30   6.5  
AB088089-1|BAC54921.1|  481|Homo sapiens tripartite motif-contai...    30   6.5  

>Y07829-1|CAB52384.1|  481|Homo sapiens RING finger protein protein.
          Length = 481

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -3

Query: 470 RFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIGLFAHIYRGVG 291
           +F+   Q   DN QR  R   V  H  I G RH  +    LA+    T+G+ +   +  G
Sbjct: 333 QFSSKWQNSPDNPQRFDRATCVLAHTGITGGRHTWVVSIDLAHGASCTVGVVSEDVQRKG 392

Query: 290 HVRL 279
            +RL
Sbjct: 393 ELRL 396


>AF220122-1|AAG53495.1|  482|Homo sapiens tripartite motif protein
           TRIM10 alpha protein.
          Length = 482

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -3

Query: 470 RFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIGLFAHIYRGVG 291
           +F+   Q   DN QR  R   V  H  I G RH  +    LA+    T+G+ +   +  G
Sbjct: 334 QFSSKWQNSPDNPQRFDRATCVLAHTGITGGRHTWVVSIDLAHGASCTVGVVSEDVQRKG 393

Query: 290 HVRL 279
            +RL
Sbjct: 394 ELRL 397


>U97145-1|AAC51647.1|  464|Homo sapiens RET ligand 2 protein.
          Length = 464

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 252 NSACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 362
           + AC +   QT +P+ + + +++PNC+  R +C+  HL
Sbjct: 226 DQACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 263


>U93703-1|AAB61922.1|  464|Homo sapiens glial cell line-derived
           neurotrophic factor receptor beta protein.
          Length = 464

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 252 NSACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 362
           + AC +   QT +P+ + + +++PNC+  R +C+  HL
Sbjct: 226 DQACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 263


>BC041688-1|AAH41688.1|  464|Homo sapiens GDNF family receptor alpha
           2 protein.
          Length = 464

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 252 NSACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 362
           + AC +   QT +P+ + + +++PNC+  R +C+  HL
Sbjct: 226 DQACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 263


>AY941828-1|AAX46325.1|  359|Homo sapiens glial cell line-derived
           neurotrophic factor family receptor alpha2b protein.
          Length = 359

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 252 NSACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 362
           + AC +   QT +P+ + + +++PNC+  R +C+  HL
Sbjct: 121 DQACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 158


>AY326396-1|AAP88378.1|  331|Homo sapiens glial cell line-derived
           neurotrophic factor family receptor alpha2c protein.
          Length = 331

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 252 NSACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 362
           + AC +   QT +P+ + + +++PNC+  R +C+  HL
Sbjct: 93  DQACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 130


>AF002700-1|AAC52036.1|  464|Homo sapiens GDNF family receptor alpha
           2 protein.
          Length = 464

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 252 NSACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 362
           + AC +   QT +P+ + + +++PNC+  R +C+  HL
Sbjct: 226 DQACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 263


>BX005441-5|CAM26238.1|  481|Homo sapiens tripartite
           motif-containing 10 protein.
          Length = 481

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -3

Query: 470 RFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIGLFAHIYRGVG 291
           +F+   Q   DN QR  R   V  H  I G RH  +    LA+    T+G+ +   +  G
Sbjct: 333 QFSYKWQNSPDNPQRFDRATCVLAHTGITGGRHTWVVSIDLAHGGSCTVGVVSEDVQRKG 392

Query: 290 HVRL 279
            +RL
Sbjct: 393 ELRL 396


>BA000025-88|BAB63332.1|  481|Homo sapiens RNF9 protein.
          Length = 481

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -3

Query: 470 RFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIGLFAHIYRGVG 291
           +F+   Q   DN QR  R   V  H  I G RH  +    LA+    T+G+ +   +  G
Sbjct: 333 QFSYKWQNSPDNPQRFDRATCVLAHTGITGGRHTWVVSIDLAHGGSCTVGVVSEDVQRKG 392

Query: 290 HVRL 279
            +RL
Sbjct: 393 ELRL 396


>AL844220-2|CAI18610.1|  481|Homo sapiens tripartite
           motif-containing 10 protein.
          Length = 481

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -3

Query: 470 RFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIGLFAHIYRGVG 291
           +F+   Q   DN QR  R   V  H  I G RH  +    LA+    T+G+ +   +  G
Sbjct: 333 QFSYKWQNSPDNPQRFDRATCVLAHTGITGGRHTWVVSIDLAHGGSCTVGVVSEDVQRKG 392

Query: 290 HVRL 279
            +RL
Sbjct: 393 ELRL 396


>AL671859-11|CAI17587.1|  481|Homo sapiens tripartite
           motif-containing 10 protein.
          Length = 481

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -3

Query: 470 RFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIGLFAHIYRGVG 291
           +F+   Q   DN QR  R   V  H  I G RH  +    LA+    T+G+ +   +  G
Sbjct: 333 QFSYKWQNSPDNPQRFDRATCVLAHTGITGGRHTWVVSIDLAHGGSCTVGVVSEDVQRKG 392

Query: 290 HVRL 279
            +RL
Sbjct: 393 ELRL 396


>AL669914-11|CAI18188.1|  481|Homo sapiens tripartite
           motif-containing 10 protein.
          Length = 481

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -3

Query: 470 RFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIGLFAHIYRGVG 291
           +F+   Q   DN QR  R   V  H  I G RH  +    LA+    T+G+ +   +  G
Sbjct: 333 QFSYKWQNSPDNPQRFDRATCVLAHTGITGGRHTWVVSIDLAHGGSCTVGVVSEDVQRKG 392

Query: 290 HVRL 279
            +RL
Sbjct: 393 ELRL 396


>AB202085-1|BAE78605.1|  481|Homo sapiens tripartite
           motif-containing 10 protein.
          Length = 481

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -3

Query: 470 RFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIGLFAHIYRGVG 291
           +F+   Q   DN QR  R   V  H  I G RH  +    LA+    T+G+ +   +  G
Sbjct: 333 QFSYKWQNSPDNPQRFDRATCVLAHTGITGGRHTWVVSIDLAHGGSCTVGVVSEDVQRKG 392

Query: 290 HVRL 279
            +RL
Sbjct: 393 ELRL 396


>AB103595-1|BAF31256.1|  481|Homo sapiens Zn-finger protein protein.
          Length = 481

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -3

Query: 470 RFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIGLFAHIYRGVG 291
           +F+   Q   DN QR  R   V  H  I G RH  +    LA+    T+G+ +   +  G
Sbjct: 333 QFSYKWQNSPDNPQRFDRATCVLAHTGITGGRHTWVVSIDLAHGGSCTVGVVSEDVQRKG 392

Query: 290 HVRL 279
            +RL
Sbjct: 393 ELRL 396


>AB088089-1|BAC54921.1|  481|Homo sapiens tripartite
           motif-containing 10 protein.
          Length = 481

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -3

Query: 470 RFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIGLFAHIYRGVG 291
           +F+   Q   DN QR  R   V  H  I G RH  +    LA+    T+G+ +   +  G
Sbjct: 333 QFSYKWQNSPDNPQRFDRATCVLAHTGITGGRHTWVVSIDLAHGGSCTVGVVSEDVQRKG 392

Query: 290 HVRL 279
            +RL
Sbjct: 393 ELRL 396


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,736,102
Number of Sequences: 237096
Number of extensions: 1763685
Number of successful extensions: 3157
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3157
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)