Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120533.Seq
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53338-7|AAA96195.2|  342|Caenorhabditis elegans Lunapark (membr...    32   0.32 
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso...    30   1.3  
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso...    30   1.3  
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor...    30   1.3  
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor...    30   1.3  
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor...    30   1.3  
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor...    30   1.3  
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor...    30   1.3  
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor...    30   1.3  
AF022981-12|AAG24202.2|  306|Caenorhabditis elegans Tfii(two)b (...    28   6.8  
U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U53338-7|AAA96195.2|  342|Caenorhabditis elegans Lunapark (membrane
           protein) homologprotein 1 protein.
          Length = 342

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 309 MRKQPNCIYFRICQYCHLEADVPSPDDHSVYRYLCVACGTL 431
           M   PNC    IC  CH    + +P ++    + C  CG L
Sbjct: 224 MSDGPNCRNALICSICHTHNGMSTPAEYPYISFRCFECGHL 264


>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
           abnormality protein1, isoform g protein.
          Length = 1604

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +1

Query: 106 LKYALRLTREYKENIIPHFDHLTRLRDLIDGMIKNEDVQRFNRINRNDLIRLACKSTFRR 285
           L  +L+LT  + E++ P  +H T +   +DG         F R  + + IRL    TFR 
Sbjct: 544 LTTSLKLTYPHSEDLFPSEEHSTVVE--LDG--------NFQRTEKQERIRLFPTKTFRP 593

Query: 286 TCPTP 300
             PTP
Sbjct: 594 RAPTP 598


>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
           abnormality protein1, isoform f protein.
          Length = 1818

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +1

Query: 106 LKYALRLTREYKENIIPHFDHLTRLRDLIDGMIKNEDVQRFNRINRNDLIRLACKSTFRR 285
           L  +L+LT  + E++ P  +H T +   +DG         F R  + + IRL    TFR 
Sbjct: 758 LTTSLKLTYPHSEDLFPSEEHSTVVE--LDG--------NFQRTEKQERIRLFPTKTFRP 807

Query: 286 TCPTP 300
             PTP
Sbjct: 808 RAPTP 812


>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform e protein.
          Length = 1954

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +1

Query: 106  LKYALRLTREYKENIIPHFDHLTRLRDLIDGMIKNEDVQRFNRINRNDLIRLACKSTFRR 285
            L  +L+LT  + E++ P  +H T +   +DG         F R  + + IRL    TFR 
Sbjct: 894  LTTSLKLTYPHSEDLFPSEEHSTVVE--LDG--------NFQRTEKQERIRLFPTKTFRP 943

Query: 286  TCPTP 300
              PTP
Sbjct: 944  RAPTP 948


>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform c protein.
          Length = 1167

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +1

Query: 106  LKYALRLTREYKENIIPHFDHLTRLRDLIDGMIKNEDVQRFNRINRNDLIRLACKSTFRR 285
            L  +L+LT  + E++ P  +H T +   +DG         F R  + + IRL    TFR 
Sbjct: 943  LTTSLKLTYPHSEDLFPSEEHSTVVE--LDG--------NFQRTEKQERIRLFPTKTFRP 992

Query: 286  TCPTP 300
              PTP
Sbjct: 993  RAPTP 997


>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform b protein.
          Length = 1685

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +1

Query: 106  LKYALRLTREYKENIIPHFDHLTRLRDLIDGMIKNEDVQRFNRINRNDLIRLACKSTFRR 285
            L  +L+LT  + E++ P  +H T +   +DG         F R  + + IRL    TFR 
Sbjct: 943  LTTSLKLTYPHSEDLFPSEEHSTVVE--LDG--------NFQRTEKQERIRLFPTKTFRP 992

Query: 286  TCPTP 300
              PTP
Sbjct: 993  RAPTP 997


>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform d protein.
          Length = 1995

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +1

Query: 106  LKYALRLTREYKENIIPHFDHLTRLRDLIDGMIKNEDVQRFNRINRNDLIRLACKSTFRR 285
            L  +L+LT  + E++ P  +H T +   +DG         F R  + + IRL    TFR 
Sbjct: 935  LTTSLKLTYPHSEDLFPSEEHSTVVE--LDG--------NFQRTEKQERIRLFPTKTFRP 984

Query: 286  TCPTP 300
              PTP
Sbjct: 985  RAPTP 989


>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform h protein.
          Length = 2006

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +1

Query: 106  LKYALRLTREYKENIIPHFDHLTRLRDLIDGMIKNEDVQRFNRINRNDLIRLACKSTFRR 285
            L  +L+LT  + E++ P  +H T +   +DG         F R  + + IRL    TFR 
Sbjct: 946  LTTSLKLTYPHSEDLFPSEEHSTVVE--LDG--------NFQRTEKQERIRLFPTKTFRP 995

Query: 286  TCPTP 300
              PTP
Sbjct: 996  RAPTP 1000


>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform a protein.
          Length = 2007

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +1

Query: 106  LKYALRLTREYKENIIPHFDHLTRLRDLIDGMIKNEDVQRFNRINRNDLIRLACKSTFRR 285
            L  +L+LT  + E++ P  +H T +   +DG         F R  + + IRL    TFR 
Sbjct: 947  LTTSLKLTYPHSEDLFPSEEHSTVVE--LDG--------NFQRTEKQERIRLFPTKTFRP 996

Query: 286  TCPTP 300
              PTP
Sbjct: 997  RAPTP 1001


>AF022981-12|AAG24202.2|  306|Caenorhabditis elegans Tfii(two)b
           (general transcriptionfactor) protein 1 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 354 CHLEADVPSPDDHSVYRYLCVACGTLLVIDHPLDVFGETEEGVNE 488
           C +  DV   +DH     +C ACG L+V D  +DV  E     NE
Sbjct: 7   CPIHPDVHLIEDHRAGDLVCPACG-LVVGDRLVDVGTEWRSFSNE 50


>U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical
           protein W03A3.2 protein.
          Length = 1540

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 411 CVACGTLLVIDHPLDVFGETEEGVNELFEVQRITPEGICSNTTTSCSQ 554
           C     L +I+ P+D    T +   E   + R   EGIC+  TT+ SQ
Sbjct: 288 CDRDAVLKIIETPIDQGVLTRKRDAERTNLSRFILEGICTGLTTTRSQ 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,416,587
Number of Sequences: 27780
Number of extensions: 297980
Number of successful extensions: 787
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)