Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120533.Seq
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   8.0  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   8.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.0  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 489 LFEVQRITPEGICSNTTTSCSQFVCAFV 572
           L  + R++ +G C N +T  S    AF+
Sbjct: 102 LMAILRMSADGGCRNFSTCSSHPTAAFI 129


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 489 LFEVQRITPEGICSNTTTSCSQFVCAFV 572
           L  + R++ +G C N +T  S    AF+
Sbjct: 101 LMAILRMSADGGCRNFSTCSSHPTAAFI 128


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 19  ALLIFDVLYIIYYWI 63
           A +IF++LY  + WI
Sbjct: 455 AFIIFNILYWSFIWI 469


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,620
Number of Sequences: 438
Number of extensions: 3654
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)