Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120533.Seq
         (667 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07000.1 68416.m00831 DC1 domain-containing protein contains ...    29   2.1  
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes...    28   6.4  
At1g04350.1 68414.m00425 2-oxoglutarate-dependent dioxygenase, p...    28   6.4  
At1g71850.1 68414.m08303 expressed protein ; expression supporte...    27   8.5  

>At3g07000.1 68416.m00831 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 574

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +3

Query: 387 DHSVYRYLCVACGTLLVIDHPLDVFGETEEGVNELFEVQRITPEGICSNTTTSCSQFVCA 566
           D SV+ Y C  CG+ L I   L  F   + G  +  E + +  +G+      SC +  C+
Sbjct: 461 DPSVWFYGCDDCGSTLHIKCVLGDFNHLKPG-KKYGEAELVVNDGMTRPFCISCKK-RCS 518

Query: 567 FVESLRVVC 593
           F   L+  C
Sbjct: 519 FPSFLKATC 527


>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes from
            this gene
          Length = 1035

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 351  YCHLEADVPSPDDHSVYRYLCVACGTLLVIDHPLDVFGETEEGVNEL 491
            +C  + D+   D  S+ +  C  CG  L+ +  +D   ET EGV +L
Sbjct: 916  FCRTDHDLIEEDFESLKKVYCT-CGEGLIPEEVVDREAETVEGVIQL 961


>At1g04350.1 68414.m00425 2-oxoglutarate-dependent dioxygenase,
           putative Similar to Arabidopsis 2A6 (gb|X83096) and to
           tomato ethylene synthesis regulatory protein E8
           (SP|P10967); EST gb|T76913 comes from this gene
          Length = 360

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 285 YMPNATIDMRKQPNCIYFRICQYCHLEADVPSPDD 389
           ++ N+  D+    +C+ +R    C++  D P+P+D
Sbjct: 129 FVYNSNFDLYSSSSCVNWRDSFACYMAPDPPNPED 163


>At1g71850.1 68414.m08303 expressed protein ; expression supported
           by MPSS
          Length = 470

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 79  KLTYKMVSLLKYALRLTREYKENIIPHFDHLTRL 180
           K+  +++ LLK+ L L ++Y E ++P F    R+
Sbjct: 149 KIPLEILDLLKWDLGLPKDYVETMVPEFPDYFRV 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,228,771
Number of Sequences: 28952
Number of extensions: 259314
Number of successful extensions: 671
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)