Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120531.Seq
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 108 7e-25
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 80 3e-16
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 67 2e-12
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 54 2e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 54 3e-08
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 52 9e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 51 2e-07
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 49 6e-07
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 48 2e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 47 3e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 46 4e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 46 8e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 44 2e-05
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 44 3e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 43 5e-05
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 42 1e-04
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 41 2e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 41 2e-04
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 41 2e-04
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 41 2e-04
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 36 0.008
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.025
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 33 0.044
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 32 0.10
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 32 0.10
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 29 0.72
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 27 3.8
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 26 6.7
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 8.9
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 8.9
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.9
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 108 bits (260), Expect = 7e-25
Identities = 51/74 (68%), Positives = 57/74 (77%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 714
TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ FG +S +RNT
Sbjct: 168 TGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNT 227
Query: 715 CVFGGAPKREQARD 756
CV+GG P+ Q RD
Sbjct: 228 CVYGGVPRGPQIRD 241
Score = 98.7 bits (235), Expect = 8e-22
Identities = 44/87 (50%), Positives = 56/87 (64%)
Frame = +3
Query: 255 WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYV 434
W + +L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV
Sbjct: 74 WKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYV 133
Query: 435 QQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ VK +G++ PTPIQ Q WP+AMS R
Sbjct: 134 LKEVKQLGFEAPTPIQQQAWPMAMSGR 160
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 80.2 bits (189), Expect = 3e-16
Identities = 35/75 (46%), Positives = 51/75 (68%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI + F +R
Sbjct: 463 KTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRA 522
Query: 712 TCVFGGAPKREQARD 756
C +GGAP ++Q D
Sbjct: 523 CCAYGGAPIKDQIAD 537
Score = 46.0 bits (104), Expect = 6e-06
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +3
Query: 264 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 440
++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 441 GVKTMGYKEPTPIQAQGWPIAMSER 515
+ ++GY++PT IQAQ P S R
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGR 456
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 67.3 bits (157), Expect = 2e-12
Identities = 39/86 (45%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Frame = +1
Query: 502 LCRKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQ 672
L RK+ +TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ
Sbjct: 284 LQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQV 343
Query: 673 VAADFGHTSYVRNTCVFGGAPKREQA 750
F R V GG EQ+
Sbjct: 344 EGNKFAEPLGFRCVSVVGGHAFEEQS 369
Score = 41.9 bits (94), Expect = 1e-04
Identities = 15/56 (26%), Positives = 34/56 (60%)
Frame = +3
Query: 348 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + +
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRK 287
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 54.4 bits (125), Expect = 2e-08
Identities = 30/74 (40%), Positives = 45/74 (60%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q + + ++
Sbjct: 210 ETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSLIQGTNLKA 267
Query: 712 TCVFGGAPKREQAR 753
V+GGAPK EQAR
Sbjct: 268 VVVYGGAPKSEQAR 281
Score = 38.7 bits (86), Expect = 9e-04
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +3
Query: 393 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
PI F+E + +++G+K YKEPTPIQA WP ++ R
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGR 203
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 53.6 bits (123), Expect = 3e-08
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQQIQQVAADFGH---T 696
QTGSGKTLAY+LP + + P R G A+++APTREL QQI VA + +
Sbjct: 186 QTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLS 245
Query: 697 SYVRNTCVFGGAPKR-EQAR 753
++ + V GG K+ E+AR
Sbjct: 246 HWIVSCNVIGGEKKKSEKAR 265
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 52.0 bits (119), Expect = 9e-08
Identities = 27/72 (37%), Positives = 40/72 (55%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKT A+++P I H+ + AL+L+P RELA Q +V DF + +R+
Sbjct: 114 RTGSGKTAAFVIPMIEHLKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRS 170
Query: 712 TCVFGGAPKREQ 747
+ GG EQ
Sbjct: 171 VAIVGGVSLEEQ 182
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 50.8 bits (116), Expect = 2e-07
Identities = 33/74 (44%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 708
QTGSGKT A+ LP I + NN P A+VLAPTRELA QI + G + VR
Sbjct: 91 QTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVR 144
Query: 709 NTCVFGGAPKREQA 750
+ + GG QA
Sbjct: 145 SVVIVGGMDMVTQA 158
Score = 32.3 bits (70), Expect = 0.077
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
F+E D + + + +G+K PTPIQ + P+ +++R
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKR 84
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 49.2 bits (112), Expect = 6e-07
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 13/87 (14%)
Frame = +1
Query: 532 QTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQQ 672
QTGSGKT ++ P + + + P P+ + G P L+LAPTREL QI +
Sbjct: 214 QTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHE 273
Query: 673 VAADFGHTSYVRNTCVFGGAPKREQAR 753
+ F + S+VR V+GGA R Q R
Sbjct: 274 ESRKFCYRSWVRPCAVYGGADIRAQIR 300
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 363 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI S R
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 47.6 bits (108), Expect = 2e-06
Identities = 29/75 (38%), Positives = 39/75 (52%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKT A+ LP I + P G AL+L PTRELA QI + A G +++
Sbjct: 52 KTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLKH 106
Query: 712 TCVFGGAPKREQARD 756
+ GG Q+ D
Sbjct: 107 ALIVGGMDMIRQSID 121
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 47.2 bits (107), Expect = 3e-06
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +1
Query: 511 KEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 675
K+ + +TGSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/44 (20%), Positives = 24/44 (54%)
Frame = +3
Query: 375 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 506
G+ + + F + N +Q+ + +++PT +Q++ P+A+
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLAL 49
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 46.4 bits (105), Expect = 4e-06
Identities = 27/61 (44%), Positives = 34/61 (55%)
Frame = +1
Query: 502 LCRKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 681
L K+ TGSGKTLAY+LP + + G G AL++APTRELA QI V
Sbjct: 36 LKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTK 93
Query: 682 D 684
+
Sbjct: 94 E 94
Score = 29.5 bits (63), Expect = 0.54
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
F+ N +++ V G+K+ TP+QA P+ + +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNK 39
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 45.6 bits (103), Expect = 8e-06
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = +1
Query: 532 QTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 705
+TGSGKTLA+++P I ++ P R G G I +++PTRELA QI VA + +
Sbjct: 134 KTGSGKTLAFLIPTIEMLYALKFKP-RNGTGVI--IISPTRELALQIFGVAKELLKYHHQ 190
Query: 706 RNTCVFGGAPKREQA 750
V GGA +R +A
Sbjct: 191 TFGIVIGGANRRAEA 205
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 44.0 bits (99), Expect = 2e-05
Identities = 27/72 (37%), Positives = 39/72 (54%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 84 KTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIGRLHSFSA 142
Query: 712 TCVFGGAPKREQ 747
+ GG +E+
Sbjct: 143 GLIIGGNNYKEE 154
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 43.6 bits (98), Expect = 3e-05
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 705
+ +TG+GKTLA++L A + P +++L+PTRELA QI + A + + +
Sbjct: 82 QAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGI 141
Query: 706 RNTCVFGGAPKREQ 747
R + GG K +
Sbjct: 142 RVSYAIGGNSKMRE 155
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 42.7 bits (96), Expect = 5e-05
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQVAADFGHTS 699
+ TGSGKTLA+ +P + H +R D ALV+APTRELA QI Q +
Sbjct: 165 KADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQHFELIKPSP 219
Query: 700 YVRNTCVFGGAPKREQAR 753
+R + GG ++Q R
Sbjct: 220 NIRVMSITGGLAVQKQQR 237
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 41.5 bits (93), Expect = 1e-04
Identities = 26/73 (35%), Positives = 39/73 (53%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 705
+ Q+G+GKT + + + I+ +++ AL+LAPTRELAQQIQ+V G V
Sbjct: 62 QAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNV 116
Query: 706 RNTCVFGGAPKRE 744
GG R+
Sbjct: 117 ECHACIGGTLVRD 129
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 41.1 bits (92), Expect = 2e-04
Identities = 26/85 (30%), Positives = 40/85 (47%)
Frame = +1
Query: 502 LCRKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 681
L K+ TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA
Sbjct: 294 LLGKDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVAT 351
Query: 682 DFGHTSYVRNTCVFGGAPKREQARD 756
+ + GG + Q ++
Sbjct: 352 KIASFTDIMVCLCIGGLSLKLQEQE 376
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 41.1 bits (92), Expect = 2e-04
Identities = 25/84 (29%), Positives = 44/84 (52%)
Frame = +1
Query: 427 IMCNKV*RQWVTKNRRLFKLKAGR*LCRKEFSWRTQTGSGKTLAYILPAIVHINNQPPIR 606
I+C + +Q +T+ + + +++ TGSGKT+AY+ P + + P
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP-- 113
Query: 607 RGDGPIALVLAPTRELAQQIQQVA 678
G A+++APTREL +QI + A
Sbjct: 114 --GGYRAIIVAPTRELCEQIYRQA 135
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 705
R + G+GKT A+++P++ ++ + + L+L PTRELA Q QV G V
Sbjct: 87 RAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNV 141
Query: 706 RNTCVFGGAPKRE 744
+ GG R+
Sbjct: 142 KVMVTTGGTTLRD 154
Score = 29.9 bits (64), Expect = 0.41
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA 527
FE+ + G+ G++ P+PIQ + PIA+S R LA
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILA 86
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 705
++Q+G+GKT A+ L + ++ P P A+ LAP+RELA+QI V + G + V
Sbjct: 159 QSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEV 213
Query: 706 R 708
+
Sbjct: 214 K 214
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 35.5 bits (78), Expect = 0.008
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSY 702
+ Q+G+GKT + + + I+ +R AL+L+PTRELA QIQ V G H +
Sbjct: 64 QAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDHMNV 118
Query: 703 VRNTCVFG 726
+ C+ G
Sbjct: 119 QCHACIGG 126
Score = 32.3 bits (70), Expect = 0.077
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 339 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 488
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.025
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 666
TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.1 bits (72), Expect = 0.044
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVAADFG-HTS 699
+ ++G GKT ++L + I P+ DG ++ LVL TRELA QI+ A F +
Sbjct: 94 QAKSGMGKTAVFVLSTLQQIE---PV---DGEVSVLVLCHTRELAFQIKNEYARFSKYLP 147
Query: 700 YVRNTCVFGG 729
VR +GG
Sbjct: 148 DVRTAVFYGG 157
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.9 bits (69), Expect = 0.10
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 666
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.9 bits (69), Expect = 0.10
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 666
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 29.1 bits (62), Expect = 0.72
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +2
Query: 158 RLDLATVAVDLEDLEDLVGKKNSLEVRTCVAQMGFCF 268
+ D++ + + + + +NS+++ +C+ Q+GFCF
Sbjct: 274 KFDISLIMALISAIINKTASQNSIKIISCLYQVGFCF 310
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Frame = +3
Query: 528 YSNGFRQNVGLHLASHC-------AHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRF 686
Y GF + G + HC H++ AY E F Y R++T + C R
Sbjct: 30 YLLGFSCSTGEKIFEHCYRDNINEKHREAAAYGEAIRQVAFSKD-YSRMATVSEDKCLRL 88
Query: 687 W 689
W
Sbjct: 89 W 89
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 6.7
Identities = 20/79 (25%), Positives = 32/79 (40%)
Frame = +3
Query: 333 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSE 512
++E+Y TVS V V + N + VQ + KE +A G I S+
Sbjct: 132 KIEKYTKETRPTVSEVRVSTKDKKEYSMNTSNLVQSNPPKVHDKENAFAEATGTSILSSK 191
Query: 513 RI*LAYSNGFRQNVGLHLA 569
+ + F +N HL+
Sbjct: 192 AVQTLLVSDFTENEPKHLS 210
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 258 DSVSLQPFNKN----FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ 401
D V L PF K FYDP P LK + +E+ + + V +H P+Q
Sbjct: 112 DVVEL-PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 660
TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 543 TGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 456 PLSLHLVAHNQENL--LLQSIE 397
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,528
Number of Sequences: 5004
Number of extensions: 61852
Number of successful extensions: 204
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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