Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120531.Seq
(758 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 90 2e-18
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 2e-16
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 67 2e-11
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 2e-08
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 57 2e-08
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 54 2e-07
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 50 2e-06
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 48 8e-06
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 48 1e-05
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 47 1e-05
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 43 3e-04
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 42 7e-04
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 39 0.004
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 39 0.005
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 39 0.005
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 37 0.015
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 36 0.027
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 36 0.047
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 33 0.19
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 33 0.25
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 30 2.3
SB_15074| Best HMM Match : PID (HMM E-Value=0.00012) 29 4.1
SB_25016| Best HMM Match : PDZ (HMM E-Value=5.6e-08) 28 7.2
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 28 7.2
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_19645| Best HMM Match : Smr (HMM E-Value=8.2) 28 9.5
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 9.5
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41) 28 9.5
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 90.2 bits (214), Expect = 2e-18
Identities = 40/66 (60%), Positives = 51/66 (77%)
Frame = +1
Query: 559 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 738
+ILP IVHIN+QP ++ GDGPI LVL PTRELAQQ+Q+VA G +R+TC++GGAPK
Sbjct: 113 FILPGIVHINHQPLLQPGDGPIVLVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPK 172
Query: 739 REQARD 756
Q R+
Sbjct: 173 GPQIRE 178
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = +3
Query: 321 RSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 488
R +EV+ YR + ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 83.0 bits (196), Expect = 2e-16
Identities = 39/74 (52%), Positives = 50/74 (67%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKT A++ PA+VHI +QP ++ GDGPI L+ APTREL QQI A FG +
Sbjct: 562 KTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRFGKAYNIHV 621
Query: 712 TCVFGGAPKREQAR 753
VFGG K EQ++
Sbjct: 622 VAVFGGGNKYEQSK 635
Score = 70.9 bits (166), Expect = 1e-12
Identities = 31/89 (34%), Positives = 47/89 (52%)
Frame = +3
Query: 249 PRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 428
P + +PFNKNFY+ HP + K+S E+++ R + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 429 YVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ ++ + Y +PT IQ Q PIA+S R
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGR 555
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 66.9 bits (156), Expect = 2e-11
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPTRELAQQIQQVAADFGHTS 699
+TGSGKT A+ +P +V I P I R + GP AL+LAPTRELAQQI++ FG
Sbjct: 146 ETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFGRPL 205
Query: 700 YVRNTCVFGGAPK 738
+R V GGA +
Sbjct: 206 GIRTVSVIGGADR 218
Score = 50.4 bits (115), Expect = 2e-06
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +3
Query: 345 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+R + ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + R
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNR 139
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 56.8 bits (131), Expect = 2e-08
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +3
Query: 261 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQ 437
+V QPF K+FY P + K +P E +E+R + E + V G P++ + + +
Sbjct: 58 TVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKIL 117
Query: 438 QGVKTMGYKEPTPIQAQGWPIAMSER 515
+K Y++PTPIQAQ P+ MS R
Sbjct: 118 DVLKKNSYEKPTPIQAQAIPVIMSGR 143
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/67 (37%), Positives = 33/67 (49%)
Frame = +1
Query: 547 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 726
K +Y P + P I G IA+V+ PTRELA QI + F + +R CV+G
Sbjct: 121 KKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYG 180
Query: 727 GAPKREQ 747
G EQ
Sbjct: 181 GTGISEQ 187
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 56.8 bits (131), Expect = 2e-08
Identities = 25/45 (55%), Positives = 32/45 (71%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 666
+TGSGKTLAY LP + + + P GD P+AL+L PTREL QQ+
Sbjct: 117 ETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQV 161
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = +3
Query: 279 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 458
F ++YD + V + S V+E R + + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 459 YKEPTPIQAQGWPIAMSER 515
++ PTPIQ Q MS R
Sbjct: 92 FQVPTPIQMQSLSCVMSGR 110
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 53.6 bits (123), Expect = 2e-07
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 473
Y HPT+ + +V++ R+ E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 474 PIQAQGWPIAMSER 515
PIQ Q P+ +S R
Sbjct: 221 PIQMQVLPVLLSGR 234
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/73 (41%), Positives = 40/73 (54%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
QTGSGKT AY+LP + + Q P+AL +APTRELA+QI A F + ++
Sbjct: 524 QTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKFSDHTPIKV 583
Query: 712 TCVFGGAPKREQA 750
+GG QA
Sbjct: 584 CVCYGGVSVPYQA 596
Score = 35.5 bits (78), Expect = 0.047
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 369 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
VSG I F E F + + + GY+ PTP+Q PI M+ R
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGR 517
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 52.8 bits (121), Expect = 3e-07
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINN----QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTS 699
QTGSGKT A++LP + + N P A+ +APTRELA QI A F H +
Sbjct: 756 QTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEARKFAHGT 815
Query: 700 YVRNTCVFGGAPKREQAR 753
+R +GG Q R
Sbjct: 816 MLRPVVCYGGVSVSHQLR 833
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +3
Query: 360 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
EV VSG I FEEAN + V+ YK+PTP+Q PI ++ R
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 749
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 50.8 bits (116), Expect = 1e-06
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRG-DGPIALVLAPTRELAQQIQQVAADFGHTSY 702
+ Q+G+GKT + + + I+ + G D ALVLAPTRELAQQIQ+V G +
Sbjct: 128 QAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVVLALGDYMH 187
Query: 703 VRNTCVFGGAPKRE 744
V+ GG RE
Sbjct: 188 VKCHACIGGTNVRE 201
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 50.0 bits (114), Expect = 2e-06
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 702
+ +TG+GKTL++ LP + + + + +RG P LV+APTRELA+Q+ + S
Sbjct: 116 QARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTRELAKQVGNEFENL--KSN 173
Query: 703 VRNTCVFGGAPKREQ 747
+ C++GG P Q
Sbjct: 174 LEVYCIYGGMPYEPQ 188
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 48.0 bits (109), Expect = 8e-06
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKTLA+++P I + Q DG ALV++PTRELA Q +V G+ +
Sbjct: 95 KTGSGKTLAFLIPIIETLWRQKWTSM-DGLGALVISPTRELAYQTFEVLVKIGNKHDLSA 153
Query: 712 TCVFGGAP-KREQAR 753
+ GG K EQ R
Sbjct: 154 GLIIGGKDLKNEQKR 168
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 47.6 bits (108), Expect = 1e-05
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRG-----DGPIALVLAPTRELAQQIQQVAADFGHT 696
QTGSGKTLAY+ P +VH + R G P A ++ P RELA QI + A H
Sbjct: 423 QTGSGKTLAYLAP-LVHRLREDEERHGILARLKRPRACIVVPARELATQILKTAKSLCHH 481
Query: 697 SYVRNTCVFGGAPKREQARD 756
+ R+ + GG K++ RD
Sbjct: 482 ARFRSVGLIGGR-KQKWMRD 500
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +3
Query: 333 EVEEYRNNHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 500
++ +R+ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 559 YILPAIVHINNQPPIRRG---DGPIALVLAPTRELAQQI 666
Y P + + P + G G A+V++PTRELAQQI
Sbjct: 183 YTTPTPIQMQATPLMAHGPKKSGFRAVVVSPTRELAQQI 221
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/66 (34%), Positives = 38/66 (57%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKT A+++P + G AL+L+PTRELA Q Q+ + G + +++
Sbjct: 326 RTGSGKTAAFLIPMFEKLQTHTA---KVGIRALILSPTRELALQTQKFIKELGRFTGLKS 382
Query: 712 TCVFGG 729
+ + GG
Sbjct: 383 SVILGG 388
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 43.6 bits (98), Expect = 2e-04
Identities = 29/76 (38%), Positives = 40/76 (52%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 705
+ Q+G+GKT + + + I+ Q +R P ALVL+PTRELA QIQ+V G V
Sbjct: 40 QAQSGTGKTATFSISVLQAIDTQ--LRE---PQALVLSPTRELANQIQKVVLALGDYMSV 94
Query: 706 RNTCVFGGAPKREQAR 753
+ GG E R
Sbjct: 95 QCHACIGGTNIGEDIR 110
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/73 (31%), Positives = 41/73 (56%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKTLA+++P +V + + + +G ++++PTREL+ Q VA D
Sbjct: 617 KTGSGKTLAFLVP-VVELLYKLQFKTRNGTGVIIISPTRELSLQTYGVARDLLKHHNFTY 675
Query: 712 TCVFGGAPKREQA 750
+ GG ++ +A
Sbjct: 676 GIIMGGVNRKAEA 688
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/73 (36%), Positives = 37/73 (50%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKT A+ LP + + + P G A+VL PTRELA QI G ++
Sbjct: 52 KTGSGKTAAFALPILQKLCDDPY-----GIFAVVLTPTRELAFQIADQFKVLGRPIGLKE 106
Query: 712 TCVFGGAPKREQA 750
+ GG +QA
Sbjct: 107 AVIVGGLDMMKQA 119
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 41.5 bits (93), Expect = 7e-04
Identities = 27/73 (36%), Positives = 36/73 (49%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKT A+ LP + + + P AL+L PTRELA QI + G V+
Sbjct: 9 ETGSGKTGAFALPILQALLDNP-----QRLFALILTPTRELAFQISEQCEALGSGIGVKC 63
Query: 712 TCVFGGAPKREQA 750
+ GG QA
Sbjct: 64 AVIVGGIDMMSQA 76
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 41.5 bits (93), Expect = 7e-04
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 16/98 (16%)
Frame = +1
Query: 502 LCRKEFSWRTQTGSGKTLAYILPAIVHIN-------NQPPI-------RRGDGPIALVLA 639
L ++ +TGSGKTLA+ +P I HI Q P +G +AL++A
Sbjct: 166 LYHRDIIGAAETGSGKTLAFGIPIIQHIEAYKKRKAEQSPSDKESDLESQGYPLLALIMA 225
Query: 640 PTRELAQQIQQVAADFGHTSYVRNTCVFGG--APKREQ 747
PTRELA Q++ + V+ + GG APK+++
Sbjct: 226 PTRELALQVKDHLVKAAKYTSVKVAAIVGGMAAPKQQR 263
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +3
Query: 360 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
EV VSG I FEEAN + V+ YK+PTP+Q PI ++ R
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 172
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/63 (34%), Positives = 33/63 (52%)
Frame = +1
Query: 502 LCRKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 681
L ++ R + G+GKT AY++P + + + ALVL PTRELA Q Q+
Sbjct: 82 LAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRELALQTSQICI 136
Query: 682 DFG 690
+ G
Sbjct: 137 ELG 139
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/63 (34%), Positives = 33/63 (52%)
Frame = +1
Query: 502 LCRKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 681
L ++ R + G+GKT AY++P + + + ALVL PTRELA Q Q+
Sbjct: 82 LAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRELALQTSQICI 136
Query: 682 DFG 690
+ G
Sbjct: 137 ELG 139
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 37.1 bits (82), Expect = 0.015
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSY 702
++Q+G+GKT A++L + ++ P P + L+PT ELA+Q +VA G H +
Sbjct: 148 QSQSGTGKTAAFVLTMLSRVDATKPY-----PQVICLSPTYELARQTGKVAEAMGKHCPH 202
Query: 703 VR-NTCVFGGA-PKREQARD 756
++ N V G P+ ++ D
Sbjct: 203 IKINYAVRGNQFPRGQKCTD 222
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +3
Query: 357 HEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSE 512
HEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ +++
Sbjct: 86 HEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLAD 140
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 36.3 bits (80), Expect = 0.027
Identities = 21/45 (46%), Positives = 24/45 (53%)
Frame = +1
Query: 619 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR 753
P ALVL+PTRELA QIQ+V G V+ GG E R
Sbjct: 4 PQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIR 48
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 35.5 bits (78), Expect = 0.047
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA-QQIQQVAADFGHTSY 702
+++TG+GK+L ++LP++ Q P RG G I ++ PTRELA Q + +V+ G S
Sbjct: 203 KSETGTGKSLVFLLPSV-----QDP-GRGYGTI--IVVPTRELASQMLYEVSRLLGDKSI 254
Query: 703 V 705
V
Sbjct: 255 V 255
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = +1
Query: 538 GSGKTLAYILPAIVHINNQPPIRR---GDGPIALVLAPTRELAQQIQQVAAD-FGHTSYV 705
GSGK LAY+LP I I + +GP+ L+L + ++ V D +
Sbjct: 234 GSGKRLAYLLPIIHQITESSVYQELPLANGPLVLILCTNWQNTARVYGVCEDLIRNRRRT 293
Query: 706 RNTCVFGGAPKREQ 747
R +FGG + ++
Sbjct: 294 RVQMIFGGGAEEDR 307
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 663
TG+GKT A++LP + + +P + LV+ PTRELA Q
Sbjct: 56 TGTGKTAAFMLPILERLLYRP--TQSPAIRVLVITPTRELAIQ 96
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 32.3 bits (70), Expect = 0.44
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 396 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
I FE+ + + + V GYK+PTP+Q PI +R
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKR 913
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPP 600
QTGSGKT A+++P + I + P
Sbjct: 920 QTGSGKTAAFLIPILSRIYMEGP 942
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +3
Query: 381 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 494
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 291 FYDPHPTVLKRSPYEVEEYRNN--HEVTVSGVEVHNPIQYFEEANFPDY 431
+ D VL E EE NN H++ + + +HNP YFE+ + DY
Sbjct: 217 YRDEDDGVLVPIEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_15074| Best HMM Match : PID (HMM E-Value=0.00012)
Length = 1153
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 446 KDNGLQRTDAYSSSRLADSYVGKNLVGVLKRVPAKR 553
K +GL+R + S RLA +G +L +K VP +R
Sbjct: 576 KGSGLERPKSLSLKRLASGSLGLHLAKFVKSVPVQR 611
>SB_25016| Best HMM Match : PDZ (HMM E-Value=5.6e-08)
Length = 816
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEEYRNN-HEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTP 476
P P V + S Y +Y + H S ++ + ++ P Y+QQ ++ +G
Sbjct: 341 PPPLVNQISQYNGSQYNQSLHYSLPSTFQISPVTPSLQPSSVPFYLQQDLEALGRISQPR 400
Query: 477 IQAQGWPIAMSERI 518
+ Q P+A +++
Sbjct: 401 VSPQSRPLASGQQV 414
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +1
Query: 505 CRKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 684
C + + ++G+GKT + + A+ ++ I + ++L PTRE+A Q++ V
Sbjct: 49 CGLDLIAQAKSGTGKTCVFSVIALENV-----ITESNCIQIIILTPTREIAVQVKDVICA 103
Query: 685 FG 690
G
Sbjct: 104 IG 105
>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 241 CSDLQRILFSHQILQILQIYCHRC-QIETN 155
CS +L +IL+ +YC +C Q ETN
Sbjct: 14 CSLCSEVLTEPKILRCFHVYCQKCLQAETN 43
>SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)
Length = 346
Score = 27.9 bits (59), Expect = 9.5
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Frame = +3
Query: 234 SEHASPRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ---- 401
SE AS S SLQ N N DP L R+ + R +VT ++ P Q
Sbjct: 239 SEGASLMKLSTSLQSLNTNIKDPRAAFLNRTKIKDLLVRTITKVTFLQQQIAQPRQLTLT 298
Query: 402 -YFEEANFPDYV----QQG--VKTMGYKEPTPIQAQG 491
YF E + DYV Q G + G P+P + G
Sbjct: 299 KYF-ETDSSDYVVELLQDGSAANSKGSDTPSPASSGG 334
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 172 CQIETNYRRICCLLQIWN-HRFHGYYSS 92
C + +YRR CC L +W H + Y+SS
Sbjct: 218 CCVRVDYRRKCC-LHVWRVHTTNTYWSS 244
>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
Length = 1093
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +1
Query: 529 TQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 708
TQT +L +P +HIN+ P R PI + + PT+ + I ++ D ++ +
Sbjct: 430 TQTTKPASLRVNVPLSLHINDSSPTRL-SFPITMDVHPTKTTSVTI-PISEDMQTSTIAK 487
Query: 709 NTCVFGGAPKREQAR 753
T F + +E ++
Sbjct: 488 QTSSFPRSNDKEASK 502
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,786,250
Number of Sequences: 59808
Number of extensions: 471618
Number of successful extensions: 1223
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -