Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120531.Seq
(758 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 111 6e-25
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 104 7e-23
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 104 7e-23
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 79 2e-15
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 79 2e-15
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 79 2e-15
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 79 3e-15
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 79 4e-15
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 76 2e-14
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 75 4e-14
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 72 4e-13
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 69 3e-12
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 62 5e-10
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 60 2e-09
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 59 4e-09
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 58 8e-09
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 58 8e-09
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 56 3e-08
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 55 4e-08
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 54 8e-08
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 54 8e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 53 2e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 52 3e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 52 5e-07
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 50 2e-06
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 48 7e-06
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 48 7e-06
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 46 2e-05
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 46 3e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 46 4e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 46 4e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 45 5e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 45 5e-05
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 44 1e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 43 2e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 43 2e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 42 3e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 42 3e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 42 4e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 41 8e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 41 8e-04
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 40 0.001
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 40 0.001
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 40 0.002
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 40 0.002
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 40 0.002
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 39 0.003
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.004
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 39 0.004
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 39 0.004
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 39 0.004
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 37 0.013
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 37 0.017
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 37 0.017
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 37 0.017
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 35 0.067
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 33 0.21
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 31 0.63
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 31 0.83
At1g47330.1 68414.m05240 expressed protein contains Pfam profile... 31 1.1
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 30 1.5
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 30 1.9
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 29 3.4
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 29 3.4
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 29 3.4
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote... 28 5.9
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.9
At2g33420.1 68415.m04096 expressed protein 28 5.9
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 5.9
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 5.9
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 5.9
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 7.7
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 111 bits (266), Expect = 6e-25
Identities = 49/75 (65%), Positives = 60/75 (80%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG +S ++
Sbjct: 144 ETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKT 203
Query: 712 TCVFGGAPKREQARD 756
TC++GG PK Q RD
Sbjct: 204 TCIYGGVPKGPQVRD 218
Score = 97.9 bits (233), Expect = 6e-21
Identities = 46/91 (50%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Frame = +3
Query: 246 SPR-WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 422
SPR D L PF KNFY P V + EVEEYR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 423 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
PDYV + VK G+ EPTPIQ+QGWP+AM R
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGR 137
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 104 bits (249), Expect = 7e-23
Identities = 47/75 (62%), Positives = 60/75 (80%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS 269
Query: 712 TCVFGGAPKREQARD 756
TC++GGAPK Q RD
Sbjct: 270 TCIYGGAPKGPQIRD 284
Score = 87.4 bits (207), Expect = 9e-18
Identities = 37/89 (41%), Positives = 57/89 (64%)
Frame = +3
Query: 249 PRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 428
P+ + +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 429 YVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + + +G+ EPTPIQAQGWP+A+ R
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 104 bits (249), Expect = 7e-23
Identities = 47/75 (62%), Positives = 60/75 (80%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS 269
Query: 712 TCVFGGAPKREQARD 756
TC++GGAPK Q RD
Sbjct: 270 TCIYGGAPKGPQIRD 284
Score = 87.4 bits (207), Expect = 9e-18
Identities = 37/89 (41%), Positives = 57/89 (64%)
Frame = +3
Query: 249 PRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 428
P+ + +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 429 YVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + + +G+ EPTPIQAQGWP+A+ R
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 79.4 bits (187), Expect = 2e-15
Identities = 39/75 (52%), Positives = 50/75 (66%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 712 TCVFGGAPKREQARD 756
TC++GGAPK Q RD
Sbjct: 262 TCLYGGAPKGPQLRD 276
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/72 (44%), Positives = 40/72 (55%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 479
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSER 515
QAQ WPIAM R
Sbjct: 185 QAQSWPIAMQGR 196
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 79.4 bits (187), Expect = 2e-15
Identities = 39/75 (52%), Positives = 50/75 (66%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 712 TCVFGGAPKREQARD 756
TC++GGAPK Q RD
Sbjct: 262 TCLYGGAPKGPQLRD 276
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/72 (44%), Positives = 40/72 (55%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 479
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSER 515
QAQ WPIAM R
Sbjct: 185 QAQSWPIAMQGR 196
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 79.4 bits (187), Expect = 2e-15
Identities = 39/75 (52%), Positives = 50/75 (66%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 712 TCVFGGAPKREQARD 756
TC++GGAPK Q RD
Sbjct: 262 TCLYGGAPKGPQLRD 276
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/72 (44%), Positives = 40/72 (55%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 479
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSER 515
QAQ WPIAM R
Sbjct: 185 QAQSWPIAMQGR 196
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 79.0 bits (186), Expect = 3e-15
Identities = 37/75 (49%), Positives = 51/75 (68%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F +R
Sbjct: 273 KTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRV 332
Query: 712 TCVFGGAPKREQARD 756
+ V+GG K EQ ++
Sbjct: 333 SAVYGGMSKHEQFKE 347
Score = 70.5 bits (165), Expect = 1e-12
Identities = 29/85 (34%), Positives = 47/85 (55%)
Frame = +3
Query: 261 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQ 440
S+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F +
Sbjct: 182 SIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 441 GVKTMGYKEPTPIQAQGWPIAMSER 515
+K Y++PT IQ Q PI +S R
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSGR 266
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 78.6 bits (185), Expect = 4e-15
Identities = 36/72 (50%), Positives = 47/72 (65%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +R
Sbjct: 574 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRC 633
Query: 712 TCVFGGAPKREQ 747
V+GG+ +Q
Sbjct: 634 VPVYGGSGVAQQ 645
Score = 61.3 bits (142), Expect = 7e-10
Identities = 28/84 (33%), Positives = 44/84 (52%)
Frame = +3
Query: 264 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 443
+ +PF KNFY + + + EV YR E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 444 VKTMGYKEPTPIQAQGWPIAMSER 515
+K + Y++P PIQ Q PI MS R
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGR 567
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 76.2 bits (179), Expect = 2e-14
Identities = 37/75 (49%), Positives = 51/75 (68%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG +S +
Sbjct: 480 KTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRISC 538
Query: 712 TCVFGGAPKREQARD 756
TC++GGAPK Q ++
Sbjct: 539 TCLYGGAPKGPQLKE 553
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = +3
Query: 282 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 449
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 450 TMGYKEPTPIQAQGWPIAMSER 515
+ G+ PTPIQAQ WPIA+ R
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSR 473
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 75.4 bits (177), Expect = 4e-14
Identities = 35/72 (48%), Positives = 46/72 (63%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +
Sbjct: 441 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIIC 500
Query: 712 TCVFGGAPKREQ 747
V+GG+ +Q
Sbjct: 501 VPVYGGSGVAQQ 512
Score = 61.7 bits (143), Expect = 5e-10
Identities = 29/84 (34%), Positives = 44/84 (52%)
Frame = +3
Query: 264 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 443
+ +PF KNFY + + + V YR E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 444 VKTMGYKEPTPIQAQGWPIAMSER 515
+K + Y++P PIQAQ PI MS R
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGR 434
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 72.1 bits (169), Expect = 4e-13
Identities = 36/75 (48%), Positives = 48/75 (64%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG +S +
Sbjct: 274 KTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFGKSSKISC 332
Query: 712 TCVFGGAPKREQARD 756
C++GGAPK Q ++
Sbjct: 333 ACLYGGAPKGPQLKE 347
Score = 35.9 bits (79), Expect = 0.029
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 444 VKTMGYKEPTPIQAQGWPIAMSER 515
V + G+ P+PIQAQ WPIAM R
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNR 267
Score = 31.1 bits (67), Expect = 0.83
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 339 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 428
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 69.3 bits (162), Expect = 3e-12
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 702
+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 358 ETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLG 417
Query: 703 VRNTCVFGGAPKREQ 747
R T + GG EQ
Sbjct: 418 FRVTSIVGGQSIEEQ 432
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/93 (21%), Positives = 48/93 (51%)
Frame = +3
Query: 237 EHASPRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEA 416
E A+ +DS ++ ++++ D + + + +R + ++ G + P++ +EE+
Sbjct: 262 EEAADTYDSFDMR-VDRHWSDKRLEEMTERDWRI--FREDFNISYKGSRIPRPMRSWEES 318
Query: 417 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + V+ GYK+P+PIQ P+ + +R
Sbjct: 319 KLTSELLKAVERAGYKKPSPIQMAAIPLGLQQR 351
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 61.7 bits (143), Expect = 5e-10
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTS 699
+TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V + G
Sbjct: 159 KTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPC 218
Query: 700 YVRNTCVFGGAPKREQ 747
+++ CV+GG+ K Q
Sbjct: 219 GLKSICVYGGSSKGPQ 234
Score = 34.7 bits (76), Expect = 0.067
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 333 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 506
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 507 SER 515
R
Sbjct: 150 DGR 152
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 696
QTGSGKT A+ P I I ++R G P+A++L+PTRELA QI A F +
Sbjct: 204 QTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQ 263
Query: 697 SYVRNTCVFGGAPKREQARD 756
+ V+ +GG P +Q R+
Sbjct: 264 TGVKVVVAYGGTPINQQLRE 283
Score = 35.1 bits (77), Expect = 0.051
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Frame = +3
Query: 255 WD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEANFP 425
WD + PF + +P P ++ + + + + SG V P+ F E +
Sbjct: 108 WDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLG 167
Query: 426 DYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + ++ Y +PTP+Q PI + R
Sbjct: 168 EALNLNIRRCKYVKPTPVQRHAIPILLEGR 197
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 58.8 bits (136), Expect = 4e-09
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 696
QTGSGKT A+ P I I I R G P+A++L+PTRELA QI A F +
Sbjct: 191 QTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQ 250
Query: 697 SYVRNTCVFGGAPKREQARD 756
+ V+ +GG P +Q R+
Sbjct: 251 TGVKVVVAYGGTPVNQQIRE 270
Score = 32.7 bits (71), Expect = 0.27
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Frame = +3
Query: 255 WD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFP 425
WD PF N DP + + E Y + + SG V P+ F E +
Sbjct: 96 WDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLG 154
Query: 426 DYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + ++ Y +PTP+Q PI + R
Sbjct: 155 EALNLNIQRCKYVKPTPVQRNAIPILAAGR 184
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 57.6 bits (133), Expect = 8e-09
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Frame = +1
Query: 502 LCRKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQI 666
L ++ QTGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 186 LAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQI 245
Query: 667 QQVAADFGHTSYVRNTCVFGGAPKREQARD 756
A F + + V+ +GG P +Q R+
Sbjct: 246 HDEAKKFSYQTGVKVVVAYGGTPIHQQLRE 275
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 363 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ER
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 57.6 bits (133), Expect = 8e-09
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Frame = +1
Query: 502 LCRKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQI 666
L ++ QTGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 186 LAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQI 245
Query: 667 QQVAADFGHTSYVRNTCVFGGAPKREQARD 756
A F + + V+ +GG P +Q R+
Sbjct: 246 HDEAKKFSYQTGVKVVVAYGGTPIHQQLRE 275
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 363 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ER
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 55.6 bits (128), Expect = 3e-08
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 702
R +TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++ +F ++
Sbjct: 147 RARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK---EFRESAP 203
Query: 703 VRNT-CVFGGAPKREQAR 753
+T C++GG P +Q R
Sbjct: 204 SLDTICLYGGTPIGQQMR 221
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 55.2 bits (127), Expect = 4e-08
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ----IQQVAADFGH 693
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q ++Q A
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVE 202
Query: 694 TSY--VRNTCVFGGAPKREQ 747
Y +R+ GG R Q
Sbjct: 203 DGYPRLRSLLCIGGVDMRSQ 222
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/75 (33%), Positives = 41/75 (54%)
Frame = +3
Query: 291 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 470
++ P V K S +++ R +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 471 TPIQAQGWPIAMSER 515
TPIQ QG P+ +S R
Sbjct: 121 TPIQVQGLPVVLSGR 135
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 54.4 bits (125), Expect = 8e-08
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Frame = +1
Query: 508 RKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQ 672
RK + TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +
Sbjct: 149 RKSVVLGSHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYR 207
Query: 673 VAADFGHTSYVRNTCVFGGAPKREQ 747
VA H + R+ V GG+ R Q
Sbjct: 208 VAKSISHHARFRSILVSGGSRIRPQ 232
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 54.4 bits (125), Expect = 8e-08
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 702
R +TG+GKTLA+ +P I I RG P LVLAPTRELA+Q+++ +F ++
Sbjct: 159 RARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK---EFRESAP 215
Query: 703 VRNT-CVFGGAPKREQARD 756
+T C++GG P +Q R+
Sbjct: 216 SLDTICLYGGTPIGQQMRE 234
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SYVR 708
TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H ++
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIV 135
Query: 709 NTCVFGGAPK-REQAR 753
V GG K +E+AR
Sbjct: 136 PGYVMGGEKKAKEKAR 151
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADFG 690
R +TG GKTLA++LP + + N P + G P LVL PTRELA+Q+ +G
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYG 198
Query: 691 HTSYVRNTCVFGG 729
+ + + C++GG
Sbjct: 199 GSLGLSSCCLYGG 211
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 687
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q +V F
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQF 245
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 473
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 474 PIQAQGWPIAMSER 515
PIQ QG P+ ++ R
Sbjct: 171 PIQVQGLPVILAGR 184
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQVAADFG 690
R +TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++ +
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE-- 202
Query: 691 HTSYVRNTCVFGG 729
Y+ CV+GG
Sbjct: 203 SAPYLSTVCVYGG 215
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 48.0 bits (109), Expect = 7e-06
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 705
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 156 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPF 215
Query: 706 RNTCVFGGAPKREQ 747
+ V GG P Q
Sbjct: 216 KTALVVGGDPMSGQ 229
Score = 34.3 bits (75), Expect = 0.089
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +3
Query: 324 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 497
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 498 IAMSERI*LA 527
A++ + LA
Sbjct: 143 AALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 48.0 bits (109), Expect = 7e-06
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 705
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 19 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPF 78
Query: 706 RNTCVFGGAPKREQ 747
+ V GG P Q
Sbjct: 79 KTALVVGGDPMSGQ 92
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/72 (34%), Positives = 43/72 (59%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G + +R
Sbjct: 73 RTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLRV 129
Query: 712 TCVFGGAPKREQ 747
+ + GG +Q
Sbjct: 130 SLLVGGDSMEDQ 141
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 509
FE N V +K GYK PTPIQ + P+ +S
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILS 64
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +1
Query: 511 KEFSWRTQTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 687
K+ +TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 127 KDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEEL 184
Query: 688 GHTSYVRNTCVFGGAPKREQAR 753
+ V GG +R +A+
Sbjct: 185 LKHHSQTVSMVIGGNNRRSEAQ 206
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +1
Query: 511 KEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 663
K+ + +TG+GKT+A++LPAI + PP R I LV+ PTRELA Q
Sbjct: 420 KDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/71 (36%), Positives = 38/71 (53%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 714
TGSGKT A+ LP + + +P +R L+L PTRELA QI + + + ++
Sbjct: 213 TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCG 270
Query: 715 CVFGGAPKREQ 747
+ GG REQ
Sbjct: 271 LIVGGLSVREQ 281
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +3
Query: 366 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
TV GV H F E N + + +T+GYK+PTPIQA P+A++ R
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR 205
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +1
Query: 511 KEFSWRTQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 666
K+ R +TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 45.2 bits (102), Expect = 5e-05
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 702
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F T
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPN 119
Query: 703 VRNTCVFGG 729
V + + GG
Sbjct: 120 VNSVLLVGG 128
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/66 (42%), Positives = 37/66 (56%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
QTGSGKT A+ LP I+H + P G ALV+ PTRELA Q+ + G +R
Sbjct: 103 QTGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAEQFKALGSCLNLRC 157
Query: 712 TCVFGG 729
+ + GG
Sbjct: 158 SVIVGG 163
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +1
Query: 511 KEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELAQQ 663
K+ + +TG+GKT+A++LP+I + PP + PI ALV+ PTRELA Q
Sbjct: 92 KDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = +1
Query: 511 KEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 663
K+ + +TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +1
Query: 502 LCRKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 663
LC ++ +TGSGKTLA+++P + ++ + DG ++++PTRELA Q
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 678
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 41.9 bits (94), Expect = 4e-04
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Frame = +1
Query: 502 LCR-KEFSWRTQTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQ 669
LC K+ + TGSGKTLA+++P + + PP + + ++++PTREL+ QI
Sbjct: 50 LCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIY 107
Query: 670 QVAADFGHT-SYVRNTCVFGG 729
VA F T + V + + GG
Sbjct: 108 NVAQPFVSTLANVNSVLLVGG 128
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 41.1 bits (92), Expect = 8e-04
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF--GHTSYV 705
+TGSGKTLA+++PA V + + +G LV+ PTRELA Q VA + H+ V
Sbjct: 199 RTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTV 257
Query: 706 RNTCVFGGAPKREQA 750
V GG ++ +A
Sbjct: 258 GK--VIGGEKRKTEA 270
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/78 (24%), Positives = 31/78 (39%)
Frame = +3
Query: 273 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 452
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 453 MGYKEPTPIQAQGWPIAM 506
MG+ T IQA+ P M
Sbjct: 172 MGFARMTQIQAKAIPPLM 189
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 41.1 bits (92), Expect = 8e-04
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +3
Query: 348 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +S R
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 663
TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQIQQVAADFGHTS 699
Q+GSGKTLAY++P I + Q + G P +VL PT ELA Q+ +
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSG 478
Query: 700 Y-VRNTCVFGGAPKREQ 747
R+ V GG +R Q
Sbjct: 479 VPFRSMVVTGGFRQRTQ 495
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 666
+ +TG+GK++A++LPAI + N+ + + AL+L PTRELA QI
Sbjct: 371 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/43 (51%), Positives = 25/43 (58%)
Frame = +1
Query: 625 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR 753
ALVLAPTRELAQQI++V G V+ GG RE R
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQR 154
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/43 (51%), Positives = 25/43 (58%)
Frame = +1
Query: 625 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR 753
ALVLAPTRELAQQI++V G V+ GG RE R
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQR 152
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQVAADFG 690
QTGSGKT A+ +P + + +++P R P A VL+PTRELA QI + G
Sbjct: 54 QTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALG 113
Query: 691 HTSYVRNTCVFGGAPKREQ 747
+R + GG + +Q
Sbjct: 114 ADISLRCAVLVGGIDRMQQ 132
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/43 (51%), Positives = 25/43 (58%)
Frame = +1
Query: 625 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR 753
ALVLAPTRELAQQI++V G V+ GG RE R
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 152
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 675
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 705
R + G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G +
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKI 228
Query: 706 RNTCVFGGAPKRE 744
+ GG ++
Sbjct: 229 QVMVTTGGTSLKD 241
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA 527
FE+ + G+ G++ P+PIQ + PIA++ R LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 705
R + G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G +
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKI 228
Query: 706 RNTCVFGGAPKRE 744
+ GG ++
Sbjct: 229 QVMVTTGGTSLKD 241
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA 527
FE+ + G+ G++ P+PIQ + PIA++ R LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 666
+ +TG+GK++A++LPAI + N+ + + L+L PTRELA QI
Sbjct: 418 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.1 bits (82), Expect = 0.013
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 678
QTGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 121 QTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 705
R + G+GKT A+ +P + I+ + + A++L PTRELA Q QV + +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNI 221
Query: 706 RNTCVFGGAPKRE 744
+ GG R+
Sbjct: 222 QVMVTTGGTSLRD 234
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 705
R + G+GKT A+ +P + I+ + + A++L PTRELA Q QV + +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNI 221
Query: 706 RNTCVFGGAPKRE 744
+ GG R+
Sbjct: 222 QVMVTTGGTSLRD 234
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 705
R + G+GKT A+ +P + I+ + + + A++L PTRELA Q QV + +
Sbjct: 197 RAKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKELSKYLKI 251
Query: 706 RNTCVFGGAPKRE 744
GG R+
Sbjct: 252 EVMVTTGGTSLRD 264
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 34.7 bits (76), Expect = 0.067
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 690
+ GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 137 QAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 33.1 bits (72), Expect = 0.21
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI 666
++ TGSGKTLAY+LP + I R A+++AP+REL QI
Sbjct: 153 QSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 31.5 bits (68), Expect = 0.63
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Frame = +1
Query: 511 KEFSWRTQTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALVLAPT 645
K+ +TGSGKTLA+ LP + + + DG + AL++ PT
Sbjct: 229 KDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPT 288
Query: 646 RELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR 753
RELA Q+ + + V+ + GG +Q R
Sbjct: 289 RELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQER 324
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 31.1 bits (67), Expect = 0.83
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = +1
Query: 526 RTQTGSGKT--LAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HT 696
+ Q+G+GKT +A + IV+I+++ LVL+P+RELA Q ++ G HT
Sbjct: 65 QAQSGTGKTSMIAISVCQIVNISSRKVQ-------VLVLSPSRELASQTEKTIQAIGAHT 117
Query: 697 SYVRNTCVFG 726
+ + C+ G
Sbjct: 118 NIQAHACIGG 127
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 393 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 482
PI+ F++ D V +GV GYK+P+ IQ
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQ 49
>At1g47330.1 68414.m05240 expressed protein contains Pfam profile
PF01595: Domain of unknown function
Length = 527
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 409 KKQIFLIMCNKV*RQWVTKNRRLFKLKAGR*LCRKEFSWRTQTGSGKTLAYILPA 573
K ++F C K Q+ + +FK++ G K + Q GSGKT PA
Sbjct: 332 KDELFKDSCRKPKAQFEVSEKEVFKIETGDAKSGKSENGEEQQGSGKTSLLAAPA 386
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 625 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGA 732
AL+L+PTRELA Q ++ G H + + C+ G +
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNS 142
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 188 LEDLEDLVGKKNSLEVRTCVAQMGFCFTPTF 280
+ D++ +GK V C A+MG CF+ T+
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTY 560
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 666
+ ++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 666
+ ++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 6 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 526 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 666
+ ++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 - Oryza sativa,
PIR:A57676
Length = 1011
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 431 CATRCKDNGLQRTDAYSSSRLADSYVGKNLVGVLKR 538
C T + GL+ + Y ++RLA S V K L+ + +R
Sbjct: 966 CLTLVLEVGLRCCEEYPTNRLATSEVAKELISIRER 1001
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 665 ICCANSLVGAKTKAIGPSPLRI 600
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 27 SKRIHSLNKHLQLNPKI 77
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 470
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 471 TPIQAQGWPIAMSE 512
+P++ + P+ S+
Sbjct: 232 SPVRDEYAPVIFSQ 245
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 470
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 471 TPIQAQGWPIAMSE 512
+P++ + P+ S+
Sbjct: 255 SPVRDEYAPVIFSQ 268
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 470
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 471 TPIQAQGWPIAMSE 512
+P++ + P+ S+
Sbjct: 232 SPVRDEYAPVIFSQ 245
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 27 SKRIHSLNKHLQLNPKI 77
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,808,674
Number of Sequences: 28952
Number of extensions: 327830
Number of successful extensions: 1058
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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