Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120528.Seq
         (627 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P69037 Cluster: FP protein; n=15; Nucleopolyhedrovirus|...   153   2e-36
UniRef50_Q90179 Cluster: FP protein; n=20; Nucleopolyhedrovirus|...   101   1e-20
UniRef50_Q91ET7 Cluster: ORF118 FP; n=10; Granulovirus|Rep: ORF1...    61   2e-08
UniRef50_Q1FMR0 Cluster: ATP-binding region, ATPase-like:Histidi...    36   0.79 
UniRef50_A7TGL4 Cluster: Putative uncharacterized protein; n=1; ...    34   3.2  
UniRef50_UPI0000499060 Cluster: hypothetical protein 300.t00009;...    32   9.8  
UniRef50_A4RRV4 Cluster: Predicted protein; n=1; Ostreococcus lu...    32   9.8  

>UniRef50_P69037 Cluster: FP protein; n=15;
           Nucleopolyhedrovirus|Rep: FP protein - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 214

 Score =  153 bits (372), Expect = 2e-36
 Identities = 74/80 (92%), Positives = 74/80 (92%)
 Frame = +2

Query: 38  RLKNFNLNINYDGPVKIFVAATAEQKLLLKKTRDALLPFYKYISICKNGVMVRRDEKSRV 217
           RLKNFNLNINYDGPVKIFVAATAEQKLLLKKTRDALLPFYKYISICKNGVMVRRDEKSRV
Sbjct: 113 RLKNFNLNINYDGPVKIFVAATAEQKLLLKKTRDALLPFYKYISICKNGVMVRRDEKSRV 172

Query: 218 FIVKNEQNIEYLKPTNITLF 277
           FIVKNEQNIEYLK      F
Sbjct: 173 FIVKNEQNIEYLKANKYYAF 192



 Score = 49.6 bits (113), Expect = 6e-05
 Identities = 37/114 (32%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
 Frame = +3

Query: 3   RAKEWQTMSREVDXXXXXXXXXXXGP*KYLWPPQRSKSCYLKKLVTLCCRFTNTFPFVKT 182
           RAKEWQT SRE             GP K        +   LKK       F       K 
Sbjct: 101 RAKEWQTKSRERRLKNFNLNINYDGPVKIFVAATAEQKLLLKKTRDALLPFYKYISICKN 160

Query: 183 VLW*DATKKVACLLLKMSKILN-ISSQQILRFS*R*VDNFEFENDSKKMLQNLI 341
            +     +K    ++K  + +  + + +   F    VDNFE ENDS+KMLQNLI
Sbjct: 161 GVMVRRDEKSRVFIVKNEQNIEYLKANKYYAFHSDSVDNFESENDSEKMLQNLI 214


>UniRef50_Q90179 Cluster: FP protein; n=20;
           Nucleopolyhedrovirus|Rep: FP protein - Lymantria dispar
           multicapsid nuclear polyhedrosis virus (LdMNPV)
          Length = 217

 Score =  101 bits (243), Expect = 1e-20
 Identities = 45/72 (62%), Positives = 60/72 (83%)
 Frame = +2

Query: 38  RLKNFNLNINYDGPVKIFVAATAEQKLLLKKTRDALLPFYKYISICKNGVMVRRDEKSRV 217
           RLKN +L + YDGPVKIFVAA+ E+K LLKKTRDALLP +KY+S+CK GVM RR++ S +
Sbjct: 114 RLKNRDLGVEYDGPVKIFVAASRERKQLLKKTRDALLPHFKYVSLCKAGVMARRNDSSEI 173

Query: 218 FIVKNEQNIEYL 253
           +I+K+E++I  L
Sbjct: 174 YIIKDERDIHKL 185


>UniRef50_Q91ET7 Cluster: ORF118 FP; n=10; Granulovirus|Rep: ORF118
           FP - Cydia pomonella granulosis virus (CpGV) (Cydia
           pomonellagranulovirus)
          Length = 161

 Score = 60.9 bits (141), Expect = 2e-08
 Identities = 30/66 (45%), Positives = 43/66 (65%)
 Frame = +2

Query: 59  NINYDGPVKIFVAATAEQKLLLKKTRDALLPFYKYISICKNGVMVRRDEKSRVFIVKNEQ 238
           N++ D  VK+F AA  + KLLL   R  L P +KYI I K GVM R   +S++ ++KNE 
Sbjct: 94  NVDGDDKVKVFAAAPTKFKLLLHTVRKTL-PNFKYIWIGKRGVMARHRSRSQIHVIKNET 152

Query: 239 NIEYLK 256
           +I+Y+K
Sbjct: 153 DIDYIK 158


>UniRef50_Q1FMR0 Cluster: ATP-binding region, ATPase-like:Histidine
           kinase, HAMP region:Histidine kinase internal region;
           n=1; Clostridium phytofermentans ISDg|Rep: ATP-binding
           region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase internal region - Clostridium
           phytofermentans ISDg
          Length = 498

 Score = 35.9 bits (79), Expect = 0.79
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
 Frame = +2

Query: 53  NLNINYDGPVKIFVAATAEQKLLLKKTRDALLPFYKYISICKNGVMVRRDEKSRVFIVKN 232
           N+N+N +   ++    T+  K L  KT DA+  +YK+    +N +   +DEKS   ++  
Sbjct: 52  NINLN-ELEEELTNVQTSMTKFLNTKTTDAMEEYYKHEQSYRNAIKSLKDEKSSDKLILM 110

Query: 233 EQNIE-----YLKPTNITL 274
           E+NI+     YL  TN T+
Sbjct: 111 ERNIKKMSEHYLLLTNQTI 129


>UniRef50_A7TGL4 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 472

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -3

Query: 283 RYEKRNICWLEIFNILLIFNNKHATFFVASHHNTVFTNGNVFVKRQQSVTSFFK*Q 116
           R +K  IC+L     L +      T F+ +  N + TNGN +    Q + SFFK Q
Sbjct: 125 RVDKTGICYLNFLEFLYLAERGTVTPFLCNDLNDI-TNGNEYQLSIQEIYSFFKSQ 179


>UniRef50_UPI0000499060 Cluster: hypothetical protein 300.t00009;
           n=2; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 300.t00009 - Entamoeba histolytica HM-1:IMSS
          Length = 533

 Score = 32.3 bits (70), Expect = 9.8
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +2

Query: 107 EQKLLLKKTRDALLPFYKYISICKNGVMVRRDEKSRVFIVKNEQNIEYL 253
           ++  L+K + + L  +Y +I+     V+   DEK +VFI +N++N E L
Sbjct: 339 KENQLIKDSNEKLQQYYAFINKEAQRVIQESDEKVKVFIKENDKNGEEL 387


>UniRef50_A4RRV4 Cluster: Predicted protein; n=1; Ostreococcus
           lucimarinus CCE9901|Rep: Predicted protein -
           Ostreococcus lucimarinus CCE9901
          Length = 2197

 Score = 32.3 bits (70), Expect = 9.8
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +3

Query: 99  PQRSKSCYL---KKLVTLCCRFTNTFPFVKTVLW*DATKKVACLL 224
           P   KSC +   KK+V L  +   TFPF  TVL     K V C L
Sbjct: 324 PTTEKSCPMPPNKKIVQLALKTMRTFPFEPTVLLRSIRKNVICYL 368


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,527,766
Number of Sequences: 1657284
Number of extensions: 10091418
Number of successful extensions: 20538
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20530
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)