Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120528.Seq
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0619 - 24481641-24482291,24482426-24482640,24482770-244831...    28   7.0  
05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309...    27   9.2  

>02_04_0619 -
           24481641-24482291,24482426-24482640,24482770-24483154,
           24483170-24483258,24485488-24485622,24485833-24487108
          Length = 916

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 35  GRLKNFNLNINYDGPVKIFVAATAEQKLLLKKTRDALLPFY 157
           G+L  F L +N+DG + I+V A  +Q    + T D ++  Y
Sbjct: 824 GKLPPFTLPVNHDGYMHIYVYAYQDQLDDARHTPDGVISDY 864


>05_04_0148 -
           18426903-18427106,18430516-18430594,18430752-18430935,
           18431020-18431063,18432028-18432165,18432713-18434511
          Length = 815

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 277 EKRNICWLEIFNILLIFNNKHATFFVASHHNTVFTNGN 164
           E  ++CW + +  L      + TF + SH NT+F N +
Sbjct: 753 EDWHVCW-DGYGFLGKLARDYVTFMILSHWNTMFLNAD 789


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,051,489
Number of Sequences: 37544
Number of extensions: 242975
Number of successful extensions: 411
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)