Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120528.Seq
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)                 29   3.1  
SB_15075| Best HMM Match : Extensin_2 (HMM E-Value=0.39)               28   7.1  
SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_10902| Best HMM Match : SH3_1 (HMM E-Value=0)                       27   9.4  
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)                        27   9.4  

>SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)
          Length = 530

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 413 CDFCQTSILCDK*NTHTPQVFIILSFIDMLPKII 514
           CD C  S LCD  N H  Q   + S +D + +++
Sbjct: 439 CDVCAQSCLCD--NDHCSQELCLTSTVDQIQQVL 470


>SB_15075| Best HMM Match : Extensin_2 (HMM E-Value=0.39)
          Length = 541

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +2

Query: 392 EKNPNIGCDFCQT--SILCDK*NTHTPQVFIILSFIDMLPKIIQTFPITVRGYLKILRS* 565
           E +P I CD+ +T  + +CD   TH   V             ++T P+TV  YL+   + 
Sbjct: 66  ETHPAIVCDYMETHPATVCDHMETHPATVC----------DYVETHPVTVCNYLETHPAI 115

Query: 566 FTKYKSTHIAT 598
              Y  T+ AT
Sbjct: 116 VCNYMETYPAT 126


>SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 71  DGPVKIFVAATAEQKLLLKKTRDALLPF-YKYISICKNGVMVRRDEKSRVFIVKNEQNIE 247
           D  + I  + TA  K + K        F +K+I      V++R+DE S    +K+ Q++ 
Sbjct: 299 DNSIYISESLTANNKAIFKGALSFKKEFRFKFIWTVHGKVLIRKDEHSPAIQIKSLQHLA 358

Query: 248 YLK 256
            L+
Sbjct: 359 DLR 361


>SB_10902| Best HMM Match : SH3_1 (HMM E-Value=0)
          Length = 824

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 164 ISICKNGVMVRRDEKSRVFIVKNEQNIEYLKPTN 265
           +SI KN  +V  D+    + V+N+QN+E   P+N
Sbjct: 120 LSIKKNDKLVIVDDSQTWWKVRNDQNVEGYVPSN 153


>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1498

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 229  FNNKHATFFVASHHNTVFTNGNVFVKRQQSVTS 131
            +++K +  F  SH N  F+N    +K Q+ VT+
Sbjct: 1051 YHSKDSLTFKCSHCNETFSNRQSLIKHQREVTA 1083


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,296,412
Number of Sequences: 59808
Number of extensions: 322349
Number of successful extensions: 574
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)