Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120528.Seq
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23510-3|AAC46782.1|  340|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical p...    28   6.3  
AF078787-4|AAC26952.2|  274|Caenorhabditis elegans Hypothetical ...    27   8.3  
AC006673-4|AAF39930.1|  512|Caenorhabditis elegans Hypothetical ...    27   8.3  

>U23510-3|AAC46782.1|  340|Caenorhabditis elegans Hypothetical
           protein R12C12.3 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -1

Query: 534 TVIGKVWIILGNISIKDNIIKTWGVCVFYLSHKMDVWQKSXPILGFFSYITRF 376
           + +G + +IL  I I   I+ T    + +L    D WQK    + FF+Y TR+
Sbjct: 40  STVGTLLLILSLIDILLLILITPIFVLVFLPLWQDQWQKYSFHMSFFAYSTRY 92


>Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical
           protein F54D5.14 protein.
          Length = 1130

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -3

Query: 616 QHNMLACSYMCRLIFCKLRS*NFQISSYRYREGLDNFR*HINKRQYNKN 470
           Q   L  S+  +L+FCK+R  N QI     ++          K++Y KN
Sbjct: 253 QDRALVASFCWKLLFCKVRDYNDQIELTLKKQEAQKTLQDETKKEYAKN 301


>Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical
           protein F54D5.14 protein.
          Length = 1130

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -3

Query: 616 QHNMLACSYMCRLIFCKLRS*NFQISSYRYREGLDNFR*HINKRQYNKN 470
           Q   L  S+  +L+FCK+R  N QI     ++          K++Y KN
Sbjct: 253 QDRALVASFCWKLLFCKVRDYNDQIELTLKKQEAQKTLQDETKKEYAKN 301


>AF078787-4|AAC26952.2|  274|Caenorhabditis elegans Hypothetical
           protein T17A3.6 protein.
          Length = 274

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -1

Query: 600 LVAICVDLYFVNYDRRIFKYPLTVIGKVWIILGNISIKDNIIKTWG 463
           L A   +  F++      KY L  I K W  L N  IK  ++K  G
Sbjct: 201 LPARSTETQFISIALNGIKYQLAPIDKKWEFLNNRFIKTTVVKAGG 246


>AC006673-4|AAF39930.1|  512|Caenorhabditis elegans Hypothetical
           protein K09D9.12 protein.
          Length = 512

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -3

Query: 220 KHATFFVASHHNTVFTNGNVFVKRQQSVTSFFK*QLLLRCGGH 92
           KH T F  +H N VF  GNV +     +T      L L  G H
Sbjct: 100 KHGTIFYGTHENKVF--GNVMIVYDYMITGNAPSPLHLLHGNH 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,262,266
Number of Sequences: 27780
Number of extensions: 255690
Number of successful extensions: 566
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)