Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120528.Seq
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   1.8  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   1.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.8  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   9.8  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   9.8  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/35 (22%), Positives = 20/35 (57%)
 Frame = -1

Query: 555 RIFKYPLTVIGKVWIILGNISIKDNIIKTWGVCVF 451
           +I+K+   ++  +W     + +KDNI++ + +  F
Sbjct: 92  KIYKWNNQILHILWTSYKKVFMKDNILRQYFITFF 126


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/35 (22%), Positives = 20/35 (57%)
 Frame = -1

Query: 555 RIFKYPLTVIGKVWIILGNISIKDNIIKTWGVCVF 451
           +I+K+   ++  +W     + +KDNI++ + +  F
Sbjct: 75  KIYKWNNQILHILWTSYKKVFMKDNILRQYFITFF 109


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 473 KLGVCVCFIYHIKWT 429
           K  + +CF+Y + WT
Sbjct: 274 KAAITICFLYVLSWT 288


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 467 GVCVCFIY 444
           GVC+CFIY
Sbjct: 368 GVCMCFIY 375


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 467 GVCVCFIY 444
           GVC+CFIY
Sbjct: 337 GVCMCFIY 344


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 467 GVCVCFIY 444
           GVC+CFIY
Sbjct: 388 GVCMCFIY 395


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 467 GVCVCFIY 444
           GVC+CFIY
Sbjct: 337 GVCMCFIY 344


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 268 YAFHSDRLIILSLKTIAKKCFKI*FNL 348
           YAF+S    +   +   +KCFK   NL
Sbjct: 359 YAFYSADFRLAFWRLTCRKCFKSRTNL 385


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 59  NINYDGPVKI--FVAATAEQKLLLKKTRDALLPFYKYISICKN 181
           NI     VKI  ++   +E + L     + L P YKY+ + +N
Sbjct: 288 NIEGTHYVKIVYYLGIPSEARELQLPGCEVLCPLYKYLQLIEN 330


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 59  NINYDGPVKI--FVAATAEQKLLLKKTRDALLPFYKYISICKN 181
           NI     VKI  ++   +E + L     + L P YKY+ + +N
Sbjct: 303 NIEGTHYVKIVYYLGIPSEARELQLPGCEVLCPLYKYLQLIEN 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,935
Number of Sequences: 438
Number of extensions: 3380
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)