Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120527.Seq
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    30   0.33 
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    30   0.43 
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       29   0.76 
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    28   1.3  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   4.0  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   7.0  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   7.0  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   9.3  

>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -3

Query: 567 LRCRLKTTMSIGRPFFYPSFSVIKNEHKICQFGRVFHQIPHGR 439
           ++CR+K  M      ++  FS +   +K+CQFGR+   I HG+
Sbjct: 20  VQCRIKEIMYWNICLYWDVFSKLIIYNKVCQFGRI--HIFHGK 60


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 10/54 (18%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
 Frame = +1

Query: 241 QIQHGQLIAIVNFLEK--KNINYILNVMPVMQDERKMSKRKKKVINNNKYILFN 396
           +++  +++A++N  ++  ++IN++ +   +  ++ K +  K++V+   K +LF+
Sbjct: 435 RLRRSEIVALINTFDRLSRSINFVDDFKQIYSEQHKPASFKRRVLRRIKQLLFS 488


>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = +1

Query: 232 LLQQIQ-HGQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYT 408
           LL ++  HG+ + I++ L +   + I ++   +Q+  K  K KKK +N  +  + N+   
Sbjct: 82  LLHEVDYHGKSLEILDMLLQSRNSMISSLRSELQE--KNQKDKKKEVNKLEEKMTNAKEP 139

Query: 409 KIKQPEWPSSPAMWDLVKNTPELADFVFIFDHTE 510
            +  P   +S A   +   TPE  +     DH E
Sbjct: 140 NVNVPSMKASSA---ISVETPETIESEASVDHKE 170


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +1

Query: 274  NFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNS---WYTKIKQPEWPSSPA 444
            + L +K  N   ++  V + + K + +K  V+ N   IL NS   W   IK+P   S P 
Sbjct: 902  SILYEKQKNLQASITEVSK-QLKSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSEPV 960

Query: 445  MWDLVKNTPELADFV 489
              D   N  +L   +
Sbjct: 961  SMDFTSNDEQLVQLL 975


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +1

Query: 319  PVMQDERKMSKRKKKVINNNKYILFNSWYTK 411
            P++ + +K+S +  K++ +N Y   N W+ +
Sbjct: 1060 PILPNLQKLSTQYSKIVRDNDYGNVNCWFNR 1090


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 330 LHDRHYVEDIVNVLFF 283
           L+DR YVE I+++LFF
Sbjct: 253 LYDRVYVEKILDILFF 268


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -1

Query: 149  PCLIFVNL*NDPLVFLMIYFFNAQQPGNSFVMKTHLTLRTFVGNYCEM 6
            P LI ++L    L   +I+FF+   P N+F M+T LT  T + N  E+
Sbjct: 993  PALIQLSLDGFRLAMNVIFFFSMDLPRNAF-MQT-LTKFTHLNNTSEL 1038


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 346 SKRKKKVINNNKYILFN-SWYTKIKQPEWP-SSPAMWDLVKNTPEL 477
           S R++ V NNN   +FN S++ KI    +   +  +WD ++N  +L
Sbjct: 232 SLRERFVDNNNSDYIFNVSYHKKIPADGFSLYTREIWDTIENNKDL 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,279,925
Number of Sequences: 5004
Number of extensions: 70726
Number of successful extensions: 219
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)