Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120527.Seq
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)                       31   1.4  
SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)                       30   1.8  
SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)                    30   1.8  
SB_50241| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)               29   5.6  
SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   5.6  
SB_957| Best HMM Match : Lactamase_B (HMM E-Value=0.38)                28   7.5  
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)                      28   9.9  

>SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)
          Length = 139

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 316 MPVMQDERKMSKRKKKVINNNKYILFNSWYTKIK 417
           +PV    +++   + K  NN KY L   WY+K++
Sbjct: 7   LPVQNQAKRLRTWRSKTRNNTKYKLICIWYSKVR 40


>SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)
          Length = 782

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 24  DKCSKRK-VCLHHKRIARLLGIKKIYHQEYKRVVSKVYKNQTW*TCRSNNLLQKLRPCAK 200
           D+ S RK  C   +   +++ I+++  Q+  R  +K+ K+  + TC       +LR CA 
Sbjct: 63  DRYSTRKGACAVVQSSQKMIDIRRVRRQKSMRSCAKLSKDNRYSTCTPAEEYAQLRVCAV 122

Query: 201 MKS 209
           ++S
Sbjct: 123 VRS 125


>SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)
          Length = 984

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 24   DKCSKRK-VCLHHKRIARLLGIKKIYHQEYKRVVSKVYKNQTW*TCRSNNLLQKLRPCAK 200
            D+ S RK  C   +   +++ I+++  Q+  R  +K+ K+  + TC       +LR CA 
Sbjct: 830  DRYSTRKGACAVVQSSQKMIDIRRVRRQKSMRSCAKLSKDNRYSTCTPAEEYAQLRVCAV 889

Query: 201  MKS 209
            ++S
Sbjct: 890  VRS 892


>SB_50241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +1

Query: 280 LEKKNINYILNVMPVMQDERKMSKRKKKVINNNKY---ILFNSWYTKIKQPEWPSSPAMW 450
           +E K + Y      V +DE K+  RK+ +    +Y   ILFN++    ++ +W  S + W
Sbjct: 26  IEAKTMKYKYGCSDVPRDE-KLDLRKRSLYYLERYFYFILFNTYLNMERRSKWDRSFSQW 84


>SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)
          Length = 710

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 229 RFQFIQQLFIFAHGRSFCRRLLLRHVYH 146
           RF    Q  I+AH  SF +R+LLR + H
Sbjct: 22  RFPRNPQKLIYAHQNSFKKRILLRRIEH 49


>SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 368

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 402 PTVKQNVFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLF 286
           P    N+ +++ +L  A   + +  HDR + E   N+LF
Sbjct: 313 PREVHNILLLMGYLNSALNPYMYSFHDRQFKEAFKNILF 351


>SB_957| Best HMM Match : Lactamase_B (HMM E-Value=0.38)
          Length = 236

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
 Frame = +1

Query: 373 NNKYILFNSWYTKIKQPEWPSSPAM--------WDLVKN-TPELADFVFIFDHTERWVKK 525
           N K+     WY  + Q +W  S           WD   + T +  D  FIF  T+ W K+
Sbjct: 120 NRKFPESIHWYVPMGQGDWIKSCGCQNVKEMEWWDQSTHPTSKGNDVAFIFTPTQHWCKR 179

Query: 526 WPTDRHRRL 552
             TD ++ L
Sbjct: 180 AATDDNKAL 188


>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
          Length = 2110

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +1

Query: 256 QLIAIVNFLEKKNINYILNVMPVMQDERKMSKRKKK 363
           ++ ++V+F+++ NI   L   P+ QDE +  KRKKK
Sbjct: 216 EISSLVDFVDE-NIEKSLLKDPLWQDEEEKGKRKKK 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,450,476
Number of Sequences: 59808
Number of extensions: 533244
Number of successful extensions: 1308
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)