Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120527.Seq
(785 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC060861-1|AAH60861.1| 580|Homo sapiens chromosome 3 open readi... 31 3.6
AK092147-1|BAC03816.1| 580|Homo sapiens protein ( Homo sapiens ... 31 3.6
BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (D... 31 4.7
AY091459-1|AAM12029.1| 374|Homo sapiens RNA polymerase III subu... 31 4.7
AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (D... 31 4.7
AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III larg... 31 4.7
BC016048-1|AAH16048.1| 317|Homo sapiens LRRC38 protein protein. 30 8.2
AL603749-2|CAH70436.1| 294|Homo sapiens leucine rich repeat con... 30 8.2
AL354712-1|CAI21926.1| 294|Homo sapiens leucine rich repeat con... 30 8.2
>BC060861-1|AAH60861.1| 580|Homo sapiens chromosome 3 open reading
frame 39 protein.
Length = 580
Score = 31.5 bits (68), Expect = 3.6
Identities = 26/90 (28%), Positives = 38/90 (42%)
Frame = -3
Query: 726 CYSAEAQHCY*MSRLTSCKTPNKAYRAFRSSLLILPNLRW*APQSVFFCSLELLRCRLKT 547
CYS EA+ TS PN R F+ +LL L + + +F +EL L+
Sbjct: 85 CYSNEAEEFIFFHGNTSVMLPNLGSRRFQPALLDLSTVE--DHNTQYFNFVELPAAALR- 141
Query: 546 TMSIGRPFFYPSFSVIKNEHKICQFGRVFH 457
+ +P F P ++I N VFH
Sbjct: 142 --FMPKPVFVPDVALIANRFNPDNLMHVFH 169
>AK092147-1|BAC03816.1| 580|Homo sapiens protein ( Homo sapiens
cDNA FLJ34828 fis, clone NT2NE2009295. ).
Length = 580
Score = 31.5 bits (68), Expect = 3.6
Identities = 26/90 (28%), Positives = 38/90 (42%)
Frame = -3
Query: 726 CYSAEAQHCY*MSRLTSCKTPNKAYRAFRSSLLILPNLRW*APQSVFFCSLELLRCRLKT 547
CYS EA+ TS PN R F+ +LL L + + +F +EL L+
Sbjct: 85 CYSNEAEEFIFFHGNTSVMLPNLGSRRFQPALLDLSTVE--DHNTQYFNFVELPAAALR- 141
Query: 546 TMSIGRPFFYPSFSVIKNEHKICQFGRVFH 457
+ +P F P ++I N VFH
Sbjct: 142 --FMPKPVFVPDVALIANRFNPDNLMHVFH 169
>BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide A, 155kDa protein.
Length = 1390
Score = 31.1 bits (67), Expect = 4.7
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +3
Query: 18 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 140
I+DKC K+ +C H + G+ KI H++Y K+VV + N
Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192
>AY091459-1|AAM12029.1| 374|Homo sapiens RNA polymerase III subunit
RPC155-A protein.
Length = 374
Score = 31.1 bits (67), Expect = 4.7
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +3
Query: 18 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 140
I+DKC K+ +C H + G+ KI H++Y K+VV + N
Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192
>AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (DNA
directed) (155kD) (RPC155) protein.
Length = 1390
Score = 31.1 bits (67), Expect = 4.7
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +3
Query: 18 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 140
I+DKC K+ +C H + G+ KI H++Y K+VV + N
Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192
>AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III largest
subunit protein.
Length = 1391
Score = 31.1 bits (67), Expect = 4.7
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +3
Query: 18 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 140
I+DKC K+ +C H + G+ KI H++Y K+VV + N
Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192
>BC016048-1|AAH16048.1| 317|Homo sapiens LRRC38 protein protein.
Length = 317
Score = 30.3 bits (65), Expect = 8.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -2
Query: 658 SLSRISQLSFNSAKFALVSTAVCLFLLAGIA 566
SL +S+ SF+ +F+L T +C+ + +G+A
Sbjct: 250 SLRELSEASFSECRFSLSLTDLCIIIFSGVA 280
>AL603749-2|CAH70436.1| 294|Homo sapiens leucine rich repeat
containing 38 protein.
Length = 294
Score = 30.3 bits (65), Expect = 8.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -2
Query: 658 SLSRISQLSFNSAKFALVSTAVCLFLLAGIA 566
SL +S+ SF+ +F+L T +C+ + +G+A
Sbjct: 227 SLRELSEASFSECRFSLSLTDLCIIIFSGVA 257
>AL354712-1|CAI21926.1| 294|Homo sapiens leucine rich repeat
containing 38 protein.
Length = 294
Score = 30.3 bits (65), Expect = 8.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -2
Query: 658 SLSRISQLSFNSAKFALVSTAVCLFLLAGIA 566
SL +S+ SF+ +F+L T +C+ + +G+A
Sbjct: 227 SLRELSEASFSECRFSLSLTDLCIIIFSGVA 257
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,267,437
Number of Sequences: 237096
Number of extensions: 2382247
Number of successful extensions: 4792
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4790
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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