Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120527.Seq
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock tr...    31   1.2  
AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock tr...    31   1.2  
AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    29   3.8  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical...    28   6.6  
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    28   6.6  
AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenase...    28   6.6  
Z11505-6|CAA77586.2|  425|Caenorhabditis elegans Hypothetical pr...    28   8.7  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 609 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 737
           N+     K+ C++ + L  E     +  F NN  PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350


>AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 609 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 737
           N+     K+ C++ + L  E     +  F NN  PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350


>AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical
           protein Y53C10A.12 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 609 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 737
           N+     K+ C++ + L  E     +  F NN  PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350


>Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical
           protein T06E6.6 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 438 ATRPLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHY 313
           A  PLG+L     VPT  Q  F+  N  ++   HF  V+ +R+Y
Sbjct: 72  AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114


>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -1

Query: 296 MFFFSKKFTIAISWP-CWICCKSSI-PVYSTTFHFCTRPQFL*KIVAPACLP 147
           +F+F     + ISWP C  CC+ SI P +  T       Q L  I++P  LP
Sbjct: 420 LFYFIFHKCLIISWPSCLSCCRGSILPQHLRTPPLVPISQLL--IISPLVLP 469


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
            B0024.8 protein.
          Length = 1185

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 307  LNVMPVMQDERKMSKRKKKVINNNKYILFN--SWYTKIKQPEWPSSPAMWDLVKNT 468
            ++++P M    K S  K++     +Y   +  ++ +K KQ E  + P +WD VKN+
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNS 1138


>AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical
           protein Y105E8B.7 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -3

Query: 687 RLTSCKTPNKAYRAFRSSLLILPNLRW*APQSVFFCSLELLRCRLKTTMSIGR 529
           RL  C   +  Y+A    LL LP+ +    Q+    S +L RC   T M IGR
Sbjct: 211 RLNECTDSHVIYKA-SEYLLTLPDTK--LSQTTLKLSFDLSRCDSTTLMDIGR 260


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
            protein Y47G6A.17 protein.
          Length = 1736

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 539  DIVVFKRQRSNSSEQKKTDCGAYQRKFGRIKRELRNAR*ALFGVLQLVKRDIQ 697
            ++  F+R   NS E++ TD      +     R LRNA   +   L  +K+ ++
Sbjct: 1345 ELSTFRRNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVE 1397


>AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenases,
           short chain protein9 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/66 (21%), Positives = 32/66 (48%)
 Frame = +1

Query: 268 IVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAM 447
           I  F++ +N+  + N   V++ E +    +  ++ NN Y    +    + +P + + P +
Sbjct: 67  IARFVDHQNMEEVKNFFEVVEKEHQ---GQLDILVNNAYQGVTAISENMGKPFYETDPYV 123

Query: 448 WDLVKN 465
           WD + N
Sbjct: 124 WDTINN 129


>Z11505-6|CAA77586.2|  425|Caenorhabditis elegans Hypothetical
           protein F59B2.9 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 23/120 (19%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
 Frame = +1

Query: 286 KKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTK---IKQPEWPSSPAMWDL 456
           K+ +N I + + +   E+K+  R K    +  Y++  +   +   ++   W +   + +L
Sbjct: 174 KRTMNRIFDKLTI---EKKLCIRPK---TSENYVIKQALRVEELFLRSARWMTREHLLEL 227

Query: 457 VKNTPELADFVFIFDHTERWVKKWPTDRHRRLQATTQQFQRAKKDRLRCLPTQIWQN*KR 636
                +L+D  F     E + +KW  ++  +++    Q+Q   + +L  L T  W + +R
Sbjct: 228 NCIVADLSDHNFQCSDFEAFAEKWMNNKSSKVENLRFQWQSDVEFKLENLKTSRWDSTRR 287


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = +1

Query: 490 FIFDHTERWVKKWPTDRHRRLQATTQQFQRAKKDRLRCLPTQIW 621
           ++  H +R ++++P+  + +     ++F+  +KD L  +PTQ W
Sbjct: 338 YVVWHCQRDIQEYPSKDYTK---EDEEFENLRKDLLNDMPTQHW 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,361,077
Number of Sequences: 27780
Number of extensions: 409046
Number of successful extensions: 1178
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)