Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120527.Seq
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide...    29   4.6  
At5g36920.1 68418.m04425 expressed protein predicted protein, Ar...    28   6.1  
At4g36010.1 68417.m05127 pathogenesis-related thaumatin family p...    28   6.1  
At3g19300.1 68416.m02448 protein kinase family protein contains ...    28   6.1  
At2g17860.1 68415.m02069 pathogenesis-related thaumatin family p...    28   6.1  
At2g04080.1 68415.m00391 MATE efflux family protein similar to h...    28   8.1  

>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
           identical to like heterochromatin protein LHP1
           [Arabidopsis thaliana] GI:15625407; contains Pfam
           profile PF00385: 'chromo' (CHRromatin Organization
           MOdifier)
          Length = 445

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +1

Query: 412 IKQPEWPSSPAMWDLVKNTPELADFVFIFDHTERWVKKWPTDRHRRLQATTQQFQRAKKD 591
           IK   WP +   W+ ++N   +AD   + D  E  +K     R R+ +      Q  KK 
Sbjct: 127 IKWRGWPETANTWEPLENLQSIAD---VIDAFEGSLKPGKPGRKRKRKYAGPHSQMKKKQ 183

Query: 592 RL 597
           RL
Sbjct: 184 RL 185


>At5g36920.1 68418.m04425 expressed protein predicted protein,
           Arabidopsis thaliana; expression supported by MPSS
          Length = 82

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 628 NSAKFALVSTAVCLFLLAGIAALSLEDDDVDRSAIFLP 515
           N++   L+S  +CL  + G+   S+ DDD+   AI+ P
Sbjct: 5   NTSHVLLLSLLLCLMFVIGLVEASIPDDDMG-PAIYTP 41


>At4g36010.1 68417.m05127 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 301

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 174 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCDEDT 46
           E CCSG F   D CKP +      +     CP A+ +  D+ T
Sbjct: 196 EYCCSGAFGTPDTCKPSEYSQFFKNA----CPRAYSYAYDDGT 234


>At3g19300.1 68416.m02448 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 663

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 226 IELLQQIQHGQLIAIVNFLEKKNINYIL 309
           IELL ++ H  L+A+  F  KKN  +++
Sbjct: 371 IELLARLHHRHLVALKGFCNKKNERFLV 398


>At2g17860.1 68415.m02069 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 253

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 174 EDCCSGMFTMFDFCKPLKRPACILDDIFF--*CPTAWQFVCDEDT 46
           E CC+G F   D C+P +        +FF   CPTA+ +  D+ T
Sbjct: 195 EFCCNGAFGTPDTCQPSEY------SVFFKKTCPTAYSYAYDDGT 233


>At2g04080.1 68415.m00391 MATE efflux family protein similar to
           hypothetical protein GB:AAC27412; contains Pfam profile
           PF01554: Uncharacterized membrane protein family
          Length = 476

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 371 TTINTFCLTVGTLRSSSPSGLVA 439
           T++ + CLT+GTL    PSG+ A
Sbjct: 287 TSVLSICLTIGTLHYVIPSGVAA 309


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,895,979
Number of Sequences: 28952
Number of extensions: 359992
Number of successful extensions: 950
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)