Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120526.Seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                  80   1e-15
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)            60   2e-09
SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   5e-09
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)            54   1e-07
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)                29   3.5  
SB_47162| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_166| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.7)             28   6.1  

>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
 Frame = +1

Query: 244 GNGSDYRLLVTQARKMAQQ*FLMYHEPIPTAQLVQHVATVMQEYTQSGGVRPFGVSLLIC 423
           G  +D R+LV +AR   Q   L   +P+    + + +AT+ Q YTQS G RPFG+S LI 
Sbjct: 77  GLTADARILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRYTQSNGRRPFGISTLIV 136

Query: 424 GWE-EGRPYLFQCDPSGAYFAWKATAMG 504
           G++ +G P L+Q DPSG Y AWK    G
Sbjct: 137 GFDFDGTPRLYQTDPSGTYHAWKVVQSG 164



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 29/77 (37%), Positives = 46/77 (59%)
 Frame = +2

Query: 20  SERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSV 199
           S  Y  ++T FSP G L Q+EYA  AV  G T+VG++ +N VV+  E K  + L +  +V
Sbjct: 2   SGSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAKLQEPRTV 61

Query: 200 NKVEMITGHIGMVYSGM 250
            K+  +  H+ M ++G+
Sbjct: 62  RKICTLDDHVLMAFAGL 78


>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 29/75 (38%), Positives = 43/75 (57%)
 Frame = +2

Query: 26  RYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNK 205
           RY  S + FSP G++ Q+EYA  AV   GT++ I+  +GVV   E    S LY+  +  +
Sbjct: 136 RYDLSASQFSPDGRVFQVEYANKAVENSGTAIAIRCKDGVVFGVEKLVLSKLYEYGANKR 195

Query: 206 VEMITGHIGMVYSGM 250
           +  I  HIGM  +G+
Sbjct: 196 IFHIDTHIGMAIAGL 210



 Score = 35.1 bits (77), Expect = 0.053
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 253 SDYRLLVTQARKMAQQ*FLMYHEPIPTAQLVQHVATVMQEYTQSGGVRPFGVSLLI 420
           +D R +V  AR+ A     +Y  PIP   LV  V+  +  +T    +RPFG  + +
Sbjct: 212 ADSRQIVATAREEAANYRSVYGSPIPLKYLVNRVSGFIHAFTLYSAMRPFGCRIYV 267


>SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 22/30 (73%), Positives = 27/30 (90%)
 Frame = +1

Query: 388 GVRPFGVSLLICGWEEGRPYLFQCDPSGAY 477
           GVRPFGVSLL+ GW++ RPYLFQCDPS ++
Sbjct: 2   GVRPFGVSLLVAGWDDDRPYLFQCDPSESF 31



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 20/30 (66%), Positives = 24/30 (80%)
 Frame = +2

Query: 590 DP*GRFEGQMTADNIEVGICDASGFRRLEP 679
           DP   FEGQMT DNIE+G+C+ +GFRRL P
Sbjct: 26  DPSESFEGQMTEDNIELGVCNENGFRRLTP 55


>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
          Length = 224

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
 Frame = +1

Query: 253 SDYRLLVTQARKMAQQ*FLMYHEPIPTAQLVQHVATVMQEYTQSGGVRPFGVSLLICGWE 432
           +D R  V +AR  A      +   IP   L + +A + Q YTQ+  +RP G  +++ G +
Sbjct: 63  ADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRIADISQVYTQNAEMRPLGCGMILIGID 122

Query: 433 EGR-PYLFQCDPSGAYFAWKATAMGKTLIMEKLSLKKDIQK 552
           E + P L++ DP+G +  +KA ++G         L+K ++K
Sbjct: 123 EEKGPQLYKTDPAGYFCGFKACSVGVKQTEANSFLEKKVKK 163



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 41  LTTFSPSGKLVQIEYALAAVAAGG-TSVGIKASNGVVIATENK 166
           +T FSP G+L       +    GG TSVGI+ ++  V+ T+ K
Sbjct: 13  ITIFSPEGRLYPSRVCFSGDQPGGLTSVGIRGADSAVVVTQKK 55


>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = +1

Query: 235 GLLGNGSDYRLLVTQARKMAQQ*FLMYHEPIPTAQLVQHVATVMQEYTQSGGVRPFG 405
           G L   +D R  V +AR  A      +   IP   L + VA + Q YTQ+  +RP G
Sbjct: 20  GRLYQVADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRVADISQVYTQNAEMRPLG 76


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = -1

Query: 349  VALIAQSGSAHDTSRITAGPSSLLESPVDDSLTHSRVNHANVASYHLDFVDTV 191
            V  +   G+A DTS +     +L ESPV   L  SR+ H +V+ + ++ +DTV
Sbjct: 1873 VLTVPLHGTAVDTSSLL---DALWESPVAGELPISRIIHLDVSPFVVEGLDTV 1922


>SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)
          Length = 581

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -1

Query: 349 VALIAQSGSAHDTSRITAGPSSLLESPVDDSLTHSRVNHANVASYHLDFVDTV 191
           V  +   G+A DTS +     +L +SPV   L  SR+ H +V+ + ++ +DTV
Sbjct: 58  VLTVPLHGTAVDTSSLL---DALWKSPVAGELPISRIIHLDVSPFVVEGLDTV 107


>SB_47162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 411 RYPKGSDATRLCVLLHDRSYV 349
           RYPK +  T  CVL+H + YV
Sbjct: 15  RYPKTTKRTLKCVLVHQKGYV 35


>SB_166| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.7)
          Length = 380

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 50  FSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKV 208
           +  +GKLV  E+ +   A   TSV     +   ++T       LY +H VNKV
Sbjct: 210 YGTTGKLVNDEFRVMR-ALNATSVATSLLSNTNVSTPLNGTFFLYRDHLVNKV 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,005,728
Number of Sequences: 59808
Number of extensions: 507190
Number of successful extensions: 1364
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)