Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120526.Seq
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 137 8e-33
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 79 2e-15
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 75 4e-14
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 73 1e-13
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 56 2e-08
AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 49 4e-06
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z78019-4|CAD54176.1| 123|Caenorhabditis elegans Hypothetical pr... 30 1.8
AL032658-1|CAA21743.2| 782|Caenorhabditis elegans Hypothetical ... 29 2.3
Z77658-8|CAE17788.1| 79|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z69385-9|CAA93425.4| 152|Caenorhabditis elegans Hypothetical pr... 28 5.4
AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical ... 28 7.1
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 137 bits (331), Expect = 8e-33
Identities = 65/101 (64%), Positives = 78/101 (77%), Gaps = 2/101 (1%)
Frame = +1
Query: 244 GNGSDYRLLVTQARKMAQQ*FLMYHEPIPTAQLVQHVATVMQEYTQSGGVRPFGVSLLIC 423
G G D+R+LV +ARK+A + +MY E +PT QLV +A VMQEYTQSGGVRPFG SLLI
Sbjct: 74 GMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIA 133
Query: 424 GWEE--GRPYLFQCDPSGAYFAWKATAMGKTLIMEKLSLKK 540
GW++ GRP LFQCDPSGAYFAWKATA+GK + K L+K
Sbjct: 134 GWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEK 174
Score = 91.9 bits (218), Expect = 4e-19
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +2
Query: 23 ERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVN 202
+ Y FSLTTFSPSGKL+QIEYAL AV G SVG++A +GVV+ATEN S+L D+
Sbjct: 3 DHYGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVLATENV-GSVLTDDQP-- 59
Query: 203 KVEMITGHIGMVYSGMG 253
KVE I+ HIG VYSGMG
Sbjct: 60 KVEQISKHIGCVYSGMG 76
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/51 (50%), Positives = 36/51 (70%)
Frame = +3
Query: 462 PLRSLFCMESHSHGKDFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGLRV 614
P + F ++ + GK+ N KTFLEKR++E LELDD +HTA+LTL+E V
Sbjct: 149 PSGAYFAWKATALGKNDVNAKTFLEKRFSEALELDDGIHTALLTLRESFDV 199
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 605 FEGQMTADNIEVGICDASGFRRL 673
F+ M +N+EV +C+++GF RL
Sbjct: 197 FDVGMNENNVEVAVCNSTGFHRL 219
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 79.4 bits (187), Expect = 2e-15
Identities = 41/88 (46%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = +1
Query: 244 GNGSDYRLLVTQARKMAQQ*FLMYHEPIPTAQLVQHVATVMQEYTQSGGVRPFGVSLLIC 423
G +D +L+ R A Y E +P QLVQ++ Q YTQ GG RPFGVSLL
Sbjct: 78 GITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYI 137
Query: 424 GWEEGRPY-LFQCDPSGAYFAWKATAMG 504
GW++ Y L+Q DPSG Y WKAT +G
Sbjct: 138 GWDKHYGYQLYQSDPSGNYTGWKATCIG 165
Score = 60.1 bits (139), Expect = 1e-09
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +2
Query: 20 SERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKH-KSILYDEHS 196
+ RY T FSP G+L Q+EYA+ A++ GT +GI +S G+V+A E K+ +L D
Sbjct: 2 ARRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVM 61
Query: 197 VNKVEMITGHIGMVYSGM 250
KV ++ +I +G+
Sbjct: 62 TEKVYRLSDNISCTVAGI 79
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 75.4 bits (177), Expect = 4e-14
Identities = 37/89 (41%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = +1
Query: 244 GNGSDYRLLVTQARKMAQQ*FLMYHEPIPTAQLVQHVATVMQEYTQSGGVRPFGVSLLIC 423
G +D R+LV +AR Q L +P+ A + +++A Q +TQS G RPFG+S+LI
Sbjct: 76 GLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLIG 135
Query: 424 GWE-EGRPYLFQCDPSGAYFAWKATAMGK 507
G++ +G P LF+ +PSGAY+ + A A G+
Sbjct: 136 GFDHDGTPRLFKTEPSGAYYEYVANATGR 164
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/75 (38%), Positives = 46/75 (61%)
Frame = +2
Query: 26 RYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNK 205
RY ++T FSP G L Q+EYA AV G T+VG++ + +VI E K L D+ ++ K
Sbjct: 3 RYDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTIRK 62
Query: 206 VEMITGHIGMVYSGM 250
+ MI H+ + ++G+
Sbjct: 63 IHMIDDHVMLAFAGL 77
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 73.3 bits (172), Expect = 1e-13
Identities = 31/81 (38%), Positives = 49/81 (60%)
Frame = +2
Query: 8 VIMASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYD 187
+ + Y + TFSP G+L Q+EYA+ AV G TS+GIK S GV++A E + S L
Sbjct: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMV 60
Query: 188 EHSVNKVEMITGHIGMVYSGM 250
++ K+ + HIG+ ++G+
Sbjct: 61 NDAIEKISKVDQHIGVTFAGL 81
Score = 47.6 bits (108), Expect = 8e-06
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Frame = +1
Query: 253 SDYRLLVTQARKMAQQ*FLMYHEPIPTAQLVQHVATVMQEY----TQSGGVRPFGVSLLI 420
+D R LV +A+ AQ + Y+ I + Q VA + ++ ++ RPFGV++L
Sbjct: 83 ADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKASMSRPFGVAMLF 142
Query: 421 CGWEEGRPYLFQCDPSGAYFAWKATAMG 504
G ++ LF DPSG + KA ++G
Sbjct: 143 AGVDQEGAKLFHLDPSGTFIDCKAKSIG 170
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/73 (32%), Positives = 43/73 (58%)
Frame = +2
Query: 29 YSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKV 208
Y + +TFSP G++ Q+EYA AV GT + I+ NGVV+ + S LY +++ ++
Sbjct: 8 YDLAASTFSPDGRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSKLYTDNANPRM 67
Query: 209 EMITGHIGMVYSG 247
+ ++G+ +G
Sbjct: 68 FNVNDNVGVAVAG 80
Score = 42.7 bits (96), Expect = 2e-04
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Frame = +1
Query: 244 GNGSDYRLLVTQARKMAQQ*FLMYHEPIPTAQLVQHVATVMQEYTQSGGVRPFGVSLLIC 423
GN D L A A + Y EP+P + VA + +T G RPFG
Sbjct: 80 GNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHTL-GISRPFGAGAFFM 138
Query: 424 GWEE---GRPYLFQCDPSGAYFAWKATAMGKTLIMEKLSLKK 540
W + GR LF +PSG + +KA A+GK K ++K
Sbjct: 139 SWNKQTGGR--LFLVEPSGLNYEYKAWAVGKHRQAAKAEIEK 178
>AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha
subunit protein 6 protein.
Length = 260
Score = 48.8 bits (111), Expect = 4e-06
Identities = 26/98 (26%), Positives = 48/98 (48%)
Frame = +1
Query: 253 SDYRLLVTQARKMAQQ*FLMYHEPIPTAQLVQHVATVMQEYTQSGGVRPFGVSLLICGWE 432
SD R+L + Y + +P +L + + +Q TQ G RPFGV +LI G++
Sbjct: 79 SDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGILIAGYD 138
Query: 433 EGRPYLFQCDPSGAYFAWKATAMGKTLIMEKLSLKKDI 546
+ ++ Q DPS + T++G + L++++
Sbjct: 139 KDGAHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNV 176
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/79 (34%), Positives = 42/79 (53%)
Frame = +2
Query: 14 MASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEH 193
M +Y +T +SP G+L Q+EYA+ A+ G +VGIK+ VI + ++ L H
Sbjct: 1 MFRNQYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDL-SSH 59
Query: 194 SVNKVEMITGHIGMVYSGM 250
KV I H G+ +G+
Sbjct: 60 Q-KKVYEIDTHAGVSIAGL 77
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 17 ASERYSFSLTTFSPSGKLVQIEYALAAV-AAGGTSVGIKASNGVVIATENKHKSILYDEH 193
+S + +T FSP G++ Q+EYA A+ + T+V +K ++ VIA + + L
Sbjct: 5 SSAGFDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVAD 64
Query: 194 SVNKVEMITGHIGMVYSGM 250
+V V I+ +G GM
Sbjct: 65 TVTSVYQISQSVGCCAIGM 83
>Z78019-4|CAD54176.1| 123|Caenorhabditis elegans Hypothetical
protein ZK863.8 protein.
Length = 123
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 462 PLRSLFCMESHSHGKDFNNGKTFLEKR 542
P + +C +S+ +DFNN KTF+ R
Sbjct: 45 PADAQYCYKSYLESRDFNNDKTFVSGR 71
>AL032658-1|CAA21743.2| 782|Caenorhabditis elegans Hypothetical
protein Y76A2B.2 protein.
Length = 782
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Frame = -1
Query: 310 SRITAGPSSLLESPVDDSLTHSRVNH-----ANVASYHLDF 203
S +T PSS L P D +++S+V H N++S HL F
Sbjct: 619 STVTLEPSSFLNFPQDWEVSNSKVEHLGLSNLNISSLHLKF 659
>Z77658-8|CAE17788.1| 79|Caenorhabditis elegans Hypothetical
protein F14D7.11 protein.
Length = 79
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -3
Query: 428 QPQINRDTPKGRTPPDCVYSCMTVATCCTNCAVGIGS*YIKNYCWA 291
QPQ NRD P C SC+ CC C V S + CWA
Sbjct: 36 QPQQNRD------PDGCCESCIACCVCC-QCCVSCCSLFT---CWA 71
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 403 GVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKTLIMEKLSLKKDIQ 549
G LLI G + P+L+ C +G A+ TA G L++D +
Sbjct: 141 GAYLLIGGVDPTGPHLYMCSANGTTMAFPFTAQGSGSYAAITILERDFK 189
>Z69385-9|CAA93425.4| 152|Caenorhabditis elegans Hypothetical
protein ZK593.2 protein.
Length = 152
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -2
Query: 180 SMLLCLF-SVAITTPFDALMPTEVPPAATAAKAYSICTNLPEG-LNVVREKLYLSDAMI 10
S LLC+F + I+ PF P+E P TAA+ ++ +G + + ++ D +
Sbjct: 4 SSLLCVFLCILISAPFTRSRPSEEHPMYTAARLTDEYKHILDGKIKLAESHIFTDDVTV 62
>AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical
protein Y76B12C.7 protein.
Length = 1454
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 155 TENKHKSILYDEHSVNKVEMITGHIGMVYSGMGQTIVYW*LK 280
T N+ +L+D+ V + G++ GMGQ + W K
Sbjct: 1161 TSNRKIKVLFDKEQKGPVTGLCAINGLLLCGMGQKVFIWQFK 1202
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,765,430
Number of Sequences: 27780
Number of extensions: 372360
Number of successful extensions: 1083
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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