Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120526.Seq
(685 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putativ... 128 3e-30
At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1) (... 128 3e-30
At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1) (... 91 8e-19
At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2) ... 81 9e-16
At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1) 80 1e-15
At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2) ... 71 5e-13
At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1) ... 71 5e-13
At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2) ... 64 6e-11
At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1) ... 63 2e-10
At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1) (... 61 8e-10
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ... 60 2e-09
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ... 59 2e-09
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 35 0.044
At5g65165.1 68418.m08196 succinate dehydrogenase, iron-sulphur s... 33 0.23
At2g27680.1 68415.m03354 aldo/keto reductase family protein cont... 31 0.71
At4g24350.1 68417.m03494 phosphorylase family protein contains P... 29 2.9
At4g35560.1 68417.m05053 expressed protein 28 5.0
At3g54280.1 68416.m05999 SNF2 domain-containing protein / helica... 28 6.6
At4g02220.1 68417.m00300 zinc finger (MYND type) family protein ... 27 8.8
At3g45060.1 68416.m04857 high-affinity nitrate transporter, puta... 27 8.8
>At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putative
nearly identical to SP|O23708 Proteasome subunit alpha
type 2 (EC 3.4.25.1) (20S proteasome alpha subunit B)
{Arabidopsis thaliana} and to At1g16470
Length = 235
Score = 128 bits (309), Expect = 3e-30
Identities = 58/99 (58%), Positives = 76/99 (76%)
Frame = +1
Query: 244 GNGSDYRLLVTQARKMAQQ*FLMYHEPIPTAQLVQHVATVMQEYTQSGGVRPFGVSLLIC 423
G G D+R+LV ++RK A+Q +Y EPIP QLV+ ATVMQE+TQSGGVRPFGVSLL+
Sbjct: 78 GMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVA 137
Query: 424 GWEEGRPYLFQCDPSGAYFAWKATAMGKTLIMEKLSLKK 540
G+++ P L+Q DPSG+YF+WKA+AMGK + K L+K
Sbjct: 138 GYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEK 176
Score = 113 bits (273), Expect = 8e-26
Identities = 57/80 (71%), Positives = 65/80 (81%)
Frame = +2
Query: 14 MASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEH 193
M +YSFSLTTFSPSGKLVQIE+AL AV +G TS+GIKASNGVVIATE K SIL DE
Sbjct: 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEA 60
Query: 194 SVNKVEMITGHIGMVYSGMG 253
SV K++ +T +IG VYSGMG
Sbjct: 61 SVQKIQHLTPNIGTVYSGMG 80
Score = 70.9 bits (166), Expect = 7e-13
Identities = 32/48 (66%), Positives = 39/48 (81%)
Frame = +3
Query: 462 PLRSLFCMESHSHGKDFNNGKTFLEKRYTEDLELDDAVHTAILTLKEG 605
P S F ++ + GK+ +N KTFLEKRYTED+ELDDA+HTAILTLKEG
Sbjct: 151 PSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEG 198
>At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1)
(PRC3) identical to proteasome subunit alpha type 2
SP:O23708, GI:6093778; identical to cDNA proteasome
subunit prc3 GI:2511573
Length = 235
Score = 128 bits (309), Expect = 3e-30
Identities = 58/99 (58%), Positives = 76/99 (76%)
Frame = +1
Query: 244 GNGSDYRLLVTQARKMAQQ*FLMYHEPIPTAQLVQHVATVMQEYTQSGGVRPFGVSLLIC 423
G G D+R+LV ++RK A+Q +Y EPIP QLV+ ATVMQE+TQSGGVRPFGVSLL+
Sbjct: 78 GMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVA 137
Query: 424 GWEEGRPYLFQCDPSGAYFAWKATAMGKTLIMEKLSLKK 540
G+++ P L+Q DPSG+YF+WKA+AMGK + K L+K
Sbjct: 138 GYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEK 176
Score = 114 bits (275), Expect = 4e-26
Identities = 57/80 (71%), Positives = 66/80 (82%)
Frame = +2
Query: 14 MASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEH 193
M +YSFSLTTFSPSGKLVQIE+AL AV +G TS+GIKASNGVVIATE K SIL DE
Sbjct: 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEA 60
Query: 194 SVNKVEMITGHIGMVYSGMG 253
SV K++ +T +IG+VYSGMG
Sbjct: 61 SVQKIQHLTPNIGVVYSGMG 80
Score = 70.9 bits (166), Expect = 7e-13
Identities = 32/48 (66%), Positives = 39/48 (81%)
Frame = +3
Query: 462 PLRSLFCMESHSHGKDFNNGKTFLEKRYTEDLELDDAVHTAILTLKEG 605
P S F ++ + GK+ +N KTFLEKRYTED+ELDDA+HTAILTLKEG
Sbjct: 151 PSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEG 198
>At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1)
(PRC9) identical to GB:AAC32057 from [Arabidopsis
thaliana] (Genetics (1998) 149 (2), 677-692); identical
to cDNA proteasome subunit prc9 GI:2511583
Length = 250
Score = 90.6 bits (215), Expect = 8e-19
Identities = 45/98 (45%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +1
Query: 253 SDYRLLVTQARKMAQQ*FLMYHEPIPTAQLVQHVATVMQEYTQSGGVRPFGVSLLICGWE 432
SD +L+ AR AQ+ MY EP+P QLVQ + Q YTQ GG+RPFGVS L GW+
Sbjct: 81 SDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWD 140
Query: 433 EGRPY-LFQCDPSGAYFAWKATAMGKTLIMEKLSLKKD 543
+ + L+ DPSG Y WKA A+G + LK+D
Sbjct: 141 KHHGFQLYMSDPSGNYGGWKAAAVGANNQAAQSILKQD 178
Score = 58.4 bits (135), Expect = 4e-09
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +2
Query: 20 SERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKS-ILYDEHS 196
S RY T FSP G+L Q+EYA+ A+ G+++GI + +GVV+ E K S +L S
Sbjct: 2 SRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTSTS 61
Query: 197 VNKVEMITGHIGMVYSGM 250
K+ I H+ +G+
Sbjct: 62 AEKMYKIDDHVACAVAGI 79
>At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2)
(PRS1) (PRC6) identical to SP|O24616 Proteasome subunit
alpha type 7-2 (EC 3.4.25.1) (20S proteasome alpha
subunit D2) {Arabidopsis thaliana}
Length = 250
Score = 80.6 bits (190), Expect = 9e-16
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
Frame = +1
Query: 244 GNGSDYRLLVTQARKMAQQ*FLMYHEPIPTAQLVQHVATVMQEYTQSGGVRPFGVSLLIC 423
G +D R+L+ +AR Q L +P+ + +++A + Q+YTQSGGVRPFG+S LI
Sbjct: 76 GLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIV 135
Query: 424 GWE--EGRPYLFQCDPSGAYFAWKATAMGKTLIMEKLSLKKDIQKT 555
G++ P L+Q DPSG + AWKA A G+ + L+K+ +++
Sbjct: 136 GFDPYSRLPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKES 181
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/75 (40%), Positives = 44/75 (58%)
Frame = +2
Query: 26 RYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNK 205
RY ++T FSP G L Q+EYAL AV G +VG++ ++ VV+A E K L D S K
Sbjct: 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARK 62
Query: 206 VEMITGHIGMVYSGM 250
+ + HI + +G+
Sbjct: 63 IVSLDNHIALACAGL 77
>At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1)
Length = 250
Score = 80.2 bits (189), Expect = 1e-15
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
Frame = +1
Query: 244 GNGSDYRLLVTQARKMAQQ*FLMYHEPIPTAQLVQHVATVMQEYTQSGGVRPFGVSLLIC 423
G +D R+L+ +AR Q L +P+ + +++A + Q+YTQSGGVRPFG+S LI
Sbjct: 76 GLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIV 135
Query: 424 GWEEGR--PYLFQCDPSGAYFAWKATAMGKTLIMEKLSLKKDIQKT 555
G++ P L+Q DPSG + AWKA A G+ + L+K+ +++
Sbjct: 136 GFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKES 181
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/75 (40%), Positives = 44/75 (58%)
Frame = +2
Query: 26 RYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNK 205
RY ++T FSP G L Q+EYAL AV G +VG++ ++ VV+A E K L D S K
Sbjct: 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARK 62
Query: 206 VEMITGHIGMVYSGM 250
+ + HI + +G+
Sbjct: 63 IVSLDNHIALACAGL 77
>At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2)
identical to 20S proteasome subunit PAE2 GB:AAC32061
from [Arabidopsis thaliana]
Length = 237
Score = 71.3 bits (167), Expect = 5e-13
Identities = 32/81 (39%), Positives = 47/81 (58%)
Frame = +2
Query: 8 VIMASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYD 187
+ + Y + TFSP G+L Q+EYA+ A+ G T++G+K GVV+A E + S L +
Sbjct: 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLE 60
Query: 188 EHSVNKVEMITGHIGMVYSGM 250
SV K+ I HIG SG+
Sbjct: 61 PSSVEKIMEIDDHIGCAMSGL 81
Score = 54.4 bits (125), Expect = 7e-08
Identities = 37/103 (35%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Frame = +1
Query: 253 SDYRLLVTQARKMAQQ*FLMYHEPIP---TAQLVQHVATVMQEYTQSGGVRPFGVSLLIC 423
+D R LV AR Q Y EP+ T Q + +A E + RPFGVSLLI
Sbjct: 83 ADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIA 142
Query: 424 GWEEGRPYLFQCDPSGAYFAWKATAMGKTLIMEKLSLKKDIQK 552
G +E P L+ DPSG ++ A A+G SL++ K
Sbjct: 143 GHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNK 185
>At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1)
identical to 20S proteasome subunit PAE1 GI:3421087 from
[Arabidopsis thaliana]
Length = 237
Score = 71.3 bits (167), Expect = 5e-13
Identities = 32/81 (39%), Positives = 47/81 (58%)
Frame = +2
Query: 8 VIMASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYD 187
+ + Y + TFSP G+L Q+EYA+ A+ G T++G+K GVV+A E + S L +
Sbjct: 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLE 60
Query: 188 EHSVNKVEMITGHIGMVYSGM 250
SV K+ I HIG SG+
Sbjct: 61 PSSVEKIMEIDDHIGCAMSGL 81
Score = 54.8 bits (126), Expect = 5e-08
Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Frame = +1
Query: 253 SDYRLLVTQARKMAQQ*FLMYHEPIP---TAQLVQHVATVMQEYTQSGGVRPFGVSLLIC 423
+D R LV AR Q Y EP+ T Q + +A E + RPFGVSLLI
Sbjct: 83 ADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIA 142
Query: 424 GWEEGRPYLFQCDPSGAYFAWKATAMGKTLIMEKLSLKKDIQKTWS 561
G +E P L+ DPSG ++ A A+G SL++ K S
Sbjct: 143 GHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLS 188
>At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2)
identical to GB:AF043519
Length = 246
Score = 64.5 bits (150), Expect = 6e-11
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Frame = +1
Query: 235 GLLGNG--SDYRLLVTQARKMAQQ*FLMYHEPIPTAQLVQHVATVMQEYTQSGGVRPFGV 408
GLL G +D R LV QAR A + Y +P L + +A Q YTQ +RP GV
Sbjct: 77 GLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAYMRPLGV 136
Query: 409 SLLICGWEEGR-PYLFQCDPSGAYFAWKATAMG 504
++ G +E R P L++CDP+G ++ KAT+ G
Sbjct: 137 VAMVLGIDEERGPLLYKCDPAGHFYGHKATSAG 169
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Frame = +2
Query: 29 YSFSLTTFSPSGKLVQIEYALAAV-AAGGTSVGIKASNGVVIATENKHKSILYDEHSVNK 205
Y +T FSP G+L Q+EYA AV AAG TS+G++ + V + T+ K L D+ SV+
Sbjct: 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSH 68
Query: 206 VEMITGHIGMVYSGM 250
+ +T ++G++ +GM
Sbjct: 69 LFPVTKYLGLLATGM 83
>At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1)
(PRC1) identical to proteasome subunit alpha type 6-1
SP:O81146 GI:12643647 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc1 GI:2511587
Length = 246
Score = 62.9 bits (146), Expect = 2e-10
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Frame = +1
Query: 235 GLLGNG--SDYRLLVTQARKMAQQ*FLMYHEPIPTAQLVQHVATVMQEYTQSGGVRPFGV 408
GL+ G +D R LV QAR A + Y +P L + +A Q YTQ +RP GV
Sbjct: 77 GLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGV 136
Query: 409 SLLICGW-EEGRPYLFQCDPSGAYFAWKATAMG 504
++ G EE P L++CDP+G ++ KAT+ G
Sbjct: 137 VAMVMGVDEENGPLLYKCDPAGHFYGHKATSAG 169
Score = 61.3 bits (142), Expect = 6e-10
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = +2
Query: 29 YSFSLTTFSPSGKLVQIEYALAAV-AAGGTSVGIKASNGVVIATENKHKSILYDEHSVNK 205
Y +T FSP G+L Q+EYA AV AG TS+G++ + V + T+ K L D+ SV
Sbjct: 9 YDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTH 68
Query: 206 VEMITGHIGMVYSGM 250
+ IT +IG+V +G+
Sbjct: 69 LFPITKYIGLVATGI 83
>At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1)
(PRC8) identical to proteasome subunit alpha type 3
SP:O23715, GI:12644056 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc8 GI:2511591
Length = 249
Score = 60.9 bits (141), Expect = 8e-10
Identities = 30/74 (40%), Positives = 42/74 (56%)
Frame = +2
Query: 29 YSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKV 208
Y S+TTFSP G++ QIEYA AV GT VGIK +G+V+ E S + S ++
Sbjct: 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMMLPGSNRRI 67
Query: 209 EMITGHIGMVYSGM 250
+ H GM +G+
Sbjct: 68 HSVHRHAGMAVAGL 81
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/99 (27%), Positives = 52/99 (52%)
Frame = +1
Query: 244 GNGSDYRLLVTQARKMAQQ*FLMYHEPIPTAQLVQHVATVMQEYTQSGGVRPFGVSLLIC 423
G +D R +V +A+ A+ +Y + +P +L + VA+ + T +RPFG +++
Sbjct: 80 GLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYWWLRPFGCGVILG 139
Query: 424 GWEEGRPYLFQCDPSGAYFAWKATAMGKTLIMEKLSLKK 540
G++ P L+ +PSG + + A+GK K ++K
Sbjct: 140 GYDRDGPQLYMIEPSGISYRYFGAAIGKGKQAAKTEIEK 178
>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
(PRC2B) (PRS1) identical to GB:AAC32063 from
[Arabidopsis thaliana] (Genetics 149 (2), 677-692
(1998)); identical to cDNA proteasome subunit prc2b
GI:2511585
Length = 277
Score = 59.7 bits (138), Expect = 2e-09
Identities = 34/104 (32%), Positives = 52/104 (50%)
Frame = +1
Query: 238 LLGNGSDYRLLVTQARKMAQQ*FLMYHEPIPTAQLVQHVATVMQEYTQSGGVRPFGVSLL 417
+ G +D R+L R + Y P+P +LV H+A Q TQ RP+GV LL
Sbjct: 74 IAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLL 133
Query: 418 ICGWEEGRPYLFQCDPSGAYFAWKATAMGKTLIMEKLSLKKDIQ 549
+ G +E +L+ PSG YF ++A A+G K L++ +
Sbjct: 134 VGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFE 177
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/79 (36%), Positives = 49/79 (62%)
Frame = +2
Query: 14 MASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEH 193
M +Y +TT+SP+G+L Q+EYA+ AV G ++G+++ + VV+A NK +S L H
Sbjct: 1 MFRNQYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSEL-SSH 59
Query: 194 SVNKVEMITGHIGMVYSGM 250
K+ + HIG+ +G+
Sbjct: 60 Q-RKIFKVDDHIGVAIAGL 77
>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
(gb|AAC32062.1)
Length = 278
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/79 (36%), Positives = 49/79 (62%)
Frame = +2
Query: 14 MASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEH 193
M +Y +TT+SP+G+L Q+EYA+ AV G ++G+++ + VV+A NK +S L H
Sbjct: 1 MFRNQYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSEL-SSH 59
Query: 194 SVNKVEMITGHIGMVYSGM 250
K+ + HIG+ +G+
Sbjct: 60 Q-RKIFKVDDHIGVAIAGL 77
Score = 59.3 bits (137), Expect = 2e-09
Identities = 34/101 (33%), Positives = 51/101 (50%)
Frame = +1
Query: 238 LLGNGSDYRLLVTQARKMAQQ*FLMYHEPIPTAQLVQHVATVMQEYTQSGGVRPFGVSLL 417
+ G +D R+L R + Y P+P +LV H+A Q TQ RP+GV LL
Sbjct: 74 IAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLL 133
Query: 418 ICGWEEGRPYLFQCDPSGAYFAWKATAMGKTLIMEKLSLKK 540
+ G +E +L+ PSG YF ++A A+G K L++
Sbjct: 134 VGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLER 174
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 35.1 bits (77), Expect = 0.044
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 406 VSLLICGWEEGRPY-LFQCDPSGAYFAWKATAMGKTLIMEKLSLKKD 543
V+ + GW+ + L+ DPSG Y W+A A+G + LK+D
Sbjct: 354 VACAVAGWDRNHGFQLYMSDPSGNYGGWQAAAVGANNQAAQSILKQD 400
>At5g65165.1 68418.m08196 succinate dehydrogenase, iron-sulphur
subunit, mitochondrial (SDH2-3) nearly identical to
mitochondrial succinate dehydrogenase iron-sulphur
subunit (sdh2-3) [gi:12049602] from Arabidopsis thaliana
Length = 309
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 455 WNR*GRPSSQPQINRDTPKGRTPPDCVYSCMTVATCCTNC 336
W + +P + +R +PK R D +Y C+ A C T+C
Sbjct: 183 WLKTRKPPKDGREHRQSPKDRKKLDGLYECILCACCTTSC 222
>At2g27680.1 68415.m03354 aldo/keto reductase family protein
contains Pfam profile PF00248: oxidoreductase, aldo/keto
reductase family
Length = 384
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 71 VQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMIT 220
V + Y L GG+ +G++ I N S++ DE VN ++ +T
Sbjct: 315 VAVRYVLDQQGVGGSMIGVRLGLAEHIQDANAIFSLVLDEEDVNSIQEVT 364
>At4g24350.1 68417.m03494 phosphorylase family protein contains Pfam
PF01048: Phosphorylase family
Length = 336
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +2
Query: 119 VGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGQTIV 265
VG+KA+ + +++ LYD V+ +M + + M + G I+
Sbjct: 246 VGLKAATAYIFVDNAAYRNFLYDTFGVSSSDMESSAVAMTCASNGYPII 294
>At4g35560.1 68417.m05053 expressed protein
Length = 917
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +2
Query: 59 SGKLVQIEYALAAVAAGGTSVGIKASNGVVI 151
S +++Q+EY + +A+ G+ V + SNG ++
Sbjct: 76 SNQVIQLEYTIPYLASNGSRVSVGYSNGDIL 106
>At3g54280.1 68416.m05999 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|O14981
TBP-associated factor 172 (TAF-172) (TAF(II)170) {Homo
sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 2049
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 277 ESPVDDSLTHSRVNHANVASYHLDFVDTVFI 185
+S +DDS +HS +NH VA + F D FI
Sbjct: 436 QSSMDDSTSHSEINH--VAEVNNHFEDKSFI 464
>At4g02220.1 68417.m00300 zinc finger (MYND type) family protein /
programmed cell death 2 C-terminal domain-containing
protein similar to SP|Q16342 Programmed cell death
protein 2 (Zinc finger protein Rp-8) {Homo sapiens};
contains Pfam profiles PF01753: MYND finger, PF04194:
Programmed cell death protein 2, C-terminal putative
domain
Length = 418
Score = 27.5 bits (58), Expect = 8.8
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +1
Query: 61 GQISANRICFSCRSRRWYFRRHQSVKWR 144
G +++C C++ R+ +HQ++ WR
Sbjct: 192 GTWKGDKLCSGCKNARYCSPKHQALHWR 219
>At3g45060.1 68416.m04857 high-affinity nitrate transporter,
putative similar to trans-membrane nitrate transporter
protein AtNRT2:1 [Arabidopsis thaliana] GI:3747058,
high-affinity nitrate transporter ACH1 [Arabidopsis
thaliana] GI:3608362
Length = 542
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 345 ATRSYGHAGVHTVGWRPTLWGISIDLWLGRRTSLPVPV 458
A R +G G + W G +WLGR +SLP+ +
Sbjct: 352 AARLFGMRGRLWILWILQTVGALFCIWLGRASSLPIAI 389
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,989,613
Number of Sequences: 28952
Number of extensions: 353501
Number of successful extensions: 979
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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