Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120525X.Seq
(536 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1190 + 35248783-35248835,35249218-35249550,35251288-352515... 29 1.8
03_05_0977 + 29355824-29357056 29 3.1
06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047 28 4.1
06_01_0096 - 794148-794246,795682-796975,798960-799417 28 5.4
01_01_0155 - 1362710-1363267 28 5.4
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235... 27 7.2
07_01_0523 - 3879550-3880134,3880313-3880491,3881519-3882383 27 7.2
06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385 27 7.2
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243... 27 7.2
02_05_0409 - 28723534-28724646 27 7.2
12_02_0672 - 21726416-21726664,21727654-21727744,21727914-217279... 27 9.5
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677... 27 9.5
01_01_0280 + 2295043-2295154,2295258-2295475,2295558-2296970 27 9.5
01_01_0148 - 1337494-1338057 27 9.5
>01_06_1190 +
35248783-35248835,35249218-35249550,35251288-35251588,
35251680-35252120
Length = 375
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -3
Query: 351 HVGCRRRIVICLQVLHNGPKLGHLFDELVAQKFEKMFFTLCMLSVL 214
H GC+R+++ + LHNG + ++ + + +TL + VL
Sbjct: 18 HCGCKRKLIPIILYLHNGRLVIGSVEDALEHELANRLYTLARVLVL 63
>03_05_0977 + 29355824-29357056
Length = 410
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 182 SIKSSFENQANNTDNIHNVKNIFSNFCATSSSNKCPN 292
S+K E QAN+TD ++N +F + + + N PN
Sbjct: 317 SLKGQQEQQANSTDVLNNQIKLFIDLTSAAELNYRPN 353
>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
Length = 396
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 320 HITIRRRHPTWTRSCVSRASPQT 388
+I RRRH T+T SC R SP +
Sbjct: 21 YIPPRRRHGTFTSSCAFRLSPSS 43
>06_01_0096 - 794148-794246,795682-796975,798960-799417
Length = 616
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 405 VQMQILGVLAEHPRRRLAKWLGHFFKTHVWHASHVYVL 518
V+MQ+LG + G +FK+H W A+H+ V+
Sbjct: 430 VRMQLLGFII----CLFVSGAGFYFKSHRWRAAHIIVI 463
>01_01_0155 - 1362710-1363267
Length = 185
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 439 CSARTPSICICTRNIEFCLRAC 374
CS P IC C +E C AC
Sbjct: 126 CSRSLPPICRCADEVESCAAAC 147
>08_02_0499 -
17820615-17822516,17823224-17823373,17823491-17823568,
17823948-17824061,17824145-17824297,17826928-17827071,
17827162-17827516,17828574-17828741,17829522-17829751,
17829916-17830049,17830686-17830749
Length = 1163
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 268 EFIKQVP---QFRTIMQYLQTYYNPTPAPDVDEIMCQSCKPANKI 393
E IKQ P + MQ++ T+ PT P +D ++ + P + I
Sbjct: 468 EGIKQAPCKALIKGFMQFMSTHGGPTEIPILDSVISNAVVPGSDI 512
>07_01_0523 - 3879550-3880134,3880313-3880491,3881519-3882383
Length = 542
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 490 TWVLKKCPNHFASLRRGCSARTPSI 416
T + K+ HFASL RG +AR+ S+
Sbjct: 29 TRLYKQLEEHFASLERGLAARSDSL 53
>06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385
Length = 157
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 439 TLDEGLQNGWDIFLRPMFGMPLMC 510
TL L W++FL FGMP +C
Sbjct: 4 TLVANLLTYWEVFLVTEFGMPTLC 27
>03_01_0309 -
2432395-2433271,2433494-2434495,2434538-2435073,
2435579-2435716,2436050-2436148,2436278-2436346,
2436968-2437063
Length = 938
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 36 ASKTCVLKRNCYEMKSIRCVFYFQNISTKA*SWTVKVLLF 155
A K+ + C E+ + C+ F + +KA SW V+ LL+
Sbjct: 27 AIKSSEVALKCSELDTTNCLGPFLTLGSKAGSWCVRHLLW 66
>02_05_0409 - 28723534-28724646
Length = 370
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -3
Query: 357 LVHVGCRRRIVICLQVLHNGPKLGHLFDELVAQK 256
LV G R +V+ + GPKLGH+F+ LV+ K
Sbjct: 240 LVAAGDRLLLVLFMM----GPKLGHMFETLVSVK 269
>12_02_0672 -
21726416-21726664,21727654-21727744,21727914-21727981,
21728684-21728809,21728893-21729113,21729876-21729903
Length = 260
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/69 (24%), Positives = 37/69 (53%)
Frame = -3
Query: 249 KMFFTLCMLSVLLA*FSKLLFMETIHLLNSVKKVRPLPSTIKLWLKYFENKKHNESISSR 70
K F T +++L SK +FM++ ++++ +RP PS + ++ + +++ + S
Sbjct: 140 KNFITAFFRNLMLVTTSKTIFMDSSDIISANSLLRP-PS---MRVRDYRSEQQQGAARST 195
Query: 69 NNCASKHTF 43
+ CA TF
Sbjct: 196 SCCAMNRTF 204
>02_05_0146 -
26267245-26267339,26267427-26267469,26267589-26267725,
26268172-26268299,26268419-26268495,26268593-26268679,
26268817-26268933,26269115-26269165,26269383-26269497,
26270033-26270292
Length = 369
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 364 CQSCKPANKIQCFECKCRYLASSLSTLD 447
C +C A K+ C C C +A + +++D
Sbjct: 316 CPNCSGAGKVMCPTCLCTGMAMANNSID 343
>01_01_0280 + 2295043-2295154,2295258-2295475,2295558-2296970
Length = 580
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 332 RRRHPTWTRSCVSRASPQTKFNVSSANADTWR 427
R+ T +C+ RA+ +T + S+ANA WR
Sbjct: 285 RKLEHTGQFACLDRAAVETPEDRSAANASAWR 316
>01_01_0148 - 1337494-1338057
Length = 187
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 439 CSARTPSICICTRNIEFCLRAC 374
C+ P IC C+ +E C AC
Sbjct: 131 CTKSLPPICHCSDEVESCAAAC 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,666,359
Number of Sequences: 37544
Number of extensions: 308859
Number of successful extensions: 961
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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