Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120525X.Seq
(536 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical pr... 29 2.1
U97008-11|AAK72054.1| 224|Caenorhabditis elegans Hypothetical p... 29 2.1
AC006748-1|AAF60514.2| 323|Caenorhabditis elegans Serpentine re... 28 3.7
Z81542-3|CAB04415.1| 308|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 28 4.9
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 28 4.9
AF067942-6|AAG45579.1| 345|Caenorhabditis elegans Hypothetical ... 28 4.9
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr... 27 6.5
AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical ... 27 6.5
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 27 6.5
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 27 8.6
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 27 8.6
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 27 8.6
AL032646-12|CAA21685.2| 411|Caenorhabditis elegans Hypothetical... 27 8.6
AL024499-5|CAC42318.1| 562|Caenorhabditis elegans Hypothetical ... 27 8.6
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 27 8.6
AF031840-1|AAC13676.1| 562|Caenorhabditis elegans GLY6c protein. 27 8.6
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 27 8.6
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 27 8.6
>Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical
protein F35E2.5 protein.
Length = 575
Score = 29.1 bits (62), Expect = 2.1
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Frame = -3
Query: 258 KFEKM--FFTLCMLSVLLA*FSKLLFMETIHLLNSVKKVRPLPSTIK--LW--LKYFENK 97
KF+ M F+ + +++++ KL E LN+ K + + + IK W L FEN
Sbjct: 2 KFKSMIIFYFIFVIAIIPIVTEKLSLKENKERLNTCGKDKDIYNGIKNNRWHILAAFENG 61
Query: 96 KHNESISSRNNCASKHTFSKRSYVLNLKL 10
+ E ISS + +++H + +LN ++
Sbjct: 62 NNIEYISSASLISNRHFITSAFSILNSQM 90
>U97008-11|AAK72054.1| 224|Caenorhabditis elegans Hypothetical
protein C03G6.5 protein.
Length = 224
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 177 IHLLNSVKKVRPLPSTIKLWLKYFENKKHN-ESISSRNNCASKHTFSKRSYVLNLKLYCN 1
+ L + +KV L K LK F+ + S S NC +K K YV ++K YC+
Sbjct: 75 VRLSDFAEKVDNLDMNDKTKLKEFKRSCDSLHSCYSNLNCTTKSDDEKDKYVESIKQYCD 134
>AC006748-1|AAF60514.2| 323|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 66 protein.
Length = 323
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 179 VSIKSSFENQANNTDNIHNVKNIFSNFCATSSSNKC 286
+SI S+F QA DN H+ + FC N C
Sbjct: 54 ISIPSAFAMQARTLDNEHSQALLCDGFCKYIGPNVC 89
>Z81542-3|CAB04415.1| 308|Caenorhabditis elegans Hypothetical
protein F49A5.4 protein.
Length = 308
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 441 GAQRGRQVSAFALETLNFVCGLARLTHD 358
G Q G+ SA ET++FVC L +D
Sbjct: 160 GTQAGKWASASCTETMSFVCELPATIYD 187
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
F15D4.7 protein.
Length = 2268
Score = 27.9 bits (59), Expect = 4.9
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +2
Query: 116 NQSLIVDGKGLTFFTEFNKC----IVSIKSSFENQANNTDNIHNVKNIFSNFCATSSSNK 283
++ L +D + FFT+ + C I+S K++ + +N + I+ VK F+ TSS
Sbjct: 1503 SEQLRLDVAEVIFFTD-SSCASYWILSNKTTRQWVSNRVETIYQVKEKFATDGITSSFRH 1561
Query: 284 CP 289
CP
Sbjct: 1562 CP 1563
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 27.9 bits (59), Expect = 4.9
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +2
Query: 116 NQSLIVDGKGLTFFTEFNKC----IVSIKSSFENQANNTDNIHNVKNIFSNFCATSSSNK 283
++ L +D + FFT+ + C I+S K++ + +N + I+ VK F+ TSS
Sbjct: 1503 SEQLRLDVAEVIFFTD-SSCASYWILSNKTTRQWVSNRVETIYQVKEKFATDGITSSFRH 1561
Query: 284 CP 289
CP
Sbjct: 1562 CP 1563
>AF067942-6|AAG45579.1| 345|Caenorhabditis elegans Hypothetical
protein ZK6.4 protein.
Length = 345
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +3
Query: 21 LTRTTASKTCVLKRNCYEMKSI--RCVF 98
+TRTT K C L NC+ I +CVF
Sbjct: 36 ITRTTPVKKCYLGENCFTKTPITQKCVF 63
>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein
C38D4.3 protein.
Length = 1784
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +2
Query: 38 FENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANN 217
FEN FEA + E S L S + + DG+G + + +S+K FE + N
Sbjct: 891 FENEKFEA--MSSEAISSNKLLSAFLPGMIKKDGRGRQKTAKEQEIEISVKKMFERKVQN 948
Query: 218 TD 223
D
Sbjct: 949 DD 950
>AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical
protein W09B6.1b protein.
Length = 813
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 266 TSSSNKCPNLGPLCNTCKHITIRRRHPT 349
T +++ + +C+T KH+TIR PT
Sbjct: 496 TRGTSRTEAMNTMCSTLKHMTIRSSFPT 523
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 266 TSSSNKCPNLGPLCNTCKHITIRRRHPT 349
T +++ + +C+T KH+TIR PT
Sbjct: 496 TRGTSRTEAMNTMCSTLKHMTIRSSFPT 523
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 313 LQTYYNPTPAPDVDEIMCQSCKPANKIQCFECKCRY 420
L T YNP D + C C + I +C C Y
Sbjct: 2060 LPTSYNPDSHDDKLFVPCSGCTSGDVIIIHKCTCAY 2095
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 313 LQTYYNPTPAPDVDEIMCQSCKPANKIQCFECKCRY 420
L T YNP D + C C + I +C C Y
Sbjct: 2060 LPTSYNPDSHDDKLFVPCSGCTSGDVIIIHKCTCAY 2095
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 182 SIKSSFENQANNTDNIHNVKNIFSNFCATSSSNK 283
+++ +F+N +NTD N FSN T + K
Sbjct: 2463 TLRQTFDNNKDNTDQAVEAANAFSNLTDTLKNAK 2496
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 182 SIKSSFENQANNTDNIHNVKNIFSNFCATSSSNK 283
+++ +F+N +NTD N FSN T + K
Sbjct: 2463 TLRQTFDNNKDNTDQAVEAANAFSNLTDTLKNAK 2496
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 182 SIKSSFENQANNTDNIHNVKNIFSNFCATSSSNK 283
+++ +F+N +NTD N FSN T + K
Sbjct: 277 TLRQTFDNNKDNTDQAVEAANAFSNLTDTLKNAK 310
>AL032646-12|CAA21685.2| 411|Caenorhabditis elegans Hypothetical
protein Y54E2A.12 protein.
Length = 411
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 2 LQYSLRFNTYDRFENVCFEAQLLRDEIDSL 91
L + RFN Y F ++C L+ E+D+L
Sbjct: 184 LSINPRFNYYQGFHDICLTVLLVCGEVDAL 213
>AL024499-5|CAC42318.1| 562|Caenorhabditis elegans Hypothetical
protein H38K22.5c protein.
Length = 562
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = -2
Query: 496 CQTWVLKKCPNHFASLRRGCSARTPSICICT 404
C W L+ CP + G R P I C+
Sbjct: 487 CLAWTLRSCPTQTTAQPSGQVTRVPKITDCS 517
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 313 LQTYYNPTPAPDVDEIMCQSCKPANKIQCFECKCRY 420
L T YNP D + C C + I +C C Y
Sbjct: 2060 LPTSYNPDSHDDKLFVPCSGCTSGDVIIIHKCTCAY 2095
>AF031840-1|AAC13676.1| 562|Caenorhabditis elegans GLY6c protein.
Length = 562
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = -2
Query: 496 CQTWVLKKCPNHFASLRRGCSARTPSICICT 404
C W L+ CP + G R P I C+
Sbjct: 487 CLAWTLRSCPTQTTAQPSGQVTRVPKITDCS 517
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 182 SIKSSFENQANNTDNIHNVKNIFSNFCATSSSNK 283
+++ +F+N +NTD N FSN T + K
Sbjct: 2463 TLRQTFDNNKDNTDQAVEAANAFSNLTDTLKNAK 2496
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 182 SIKSSFENQANNTDNIHNVKNIFSNFCATSSSNK 283
+++ +F+N +NTD N FSN T + K
Sbjct: 2463 TLRQTFDNNKDNTDQAVEAANAFSNLTDTLKNAK 2496
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,338,235
Number of Sequences: 27780
Number of extensions: 301223
Number of successful extensions: 1081
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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