Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120525X.Seq
(536 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04800.1 68416.m00518 mitochondrial import inner membrane tra... 31 0.64
At5g41580.1 68418.m05052 zinc finger (MIZ type) family protein c... 29 2.6
At5g12980.1 68418.m01488 rcd1-like cell differentiation protein,... 29 2.6
At3g23070.1 68416.m02908 expressed protein contains Pfam domain,... 29 2.6
At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein le... 28 3.4
At3g62200.1 68416.m06988 expressed protein contains Pfam profile... 28 3.4
At3g59210.1 68416.m06601 F-box family protein contains F-box dom... 28 4.5
At2g40250.1 68415.m04950 GDSL-motif lipase/hydrolase family prot... 28 4.5
At1g01290.1 68414.m00045 molybdopterin biosynthesis CNX3 protein... 28 4.5
At5g62800.1 68418.m07883 seven in absentia (SINA) family protein... 27 7.9
At5g59030.1 68418.m07395 copper transporter 1 (COPT1) nearly ide... 27 7.9
>At3g04800.1 68416.m00518 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
contains Pfam PF02466: Mitochondrial import inner
membrane translocase subunit Tim17
Length = 188
Score = 30.7 bits (66), Expect = 0.64
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +2
Query: 5 QYSLRFNTYDRFENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVS 184
Q ++ Y+ ++ V + L + S FLF + + + G+ LTFFT + C S
Sbjct: 12 QQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTGWGYCTGS 71
Query: 185 IKSSFE 202
+ +F+
Sbjct: 72 VLGAFK 77
>At5g41580.1 68418.m05052 zinc finger (MIZ type) family protein
contains Pfam domain PF02891: MIZ zinc finger
Length = 703
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 290 NLGPLCNTCKHITIRRRHPTW-TRSCVSRASPQTKFNVSSANADTWRPR 433
N G T H + R+HP+ T VSR S +++ + WRPR
Sbjct: 572 NYGVRGLTSSHASTSRQHPSGPTVQSVSRLSDLVDVDLTVPDTSNWRPR 620
>At5g12980.1 68418.m01488 rcd1-like cell differentiation protein,
putative similar to protein involved in sexual
development [Schizosaccharomyces pombe] GI:1620896;
contains Pfam profile PF04078: Cell differentiation
family, Rcd1-like
Length = 311
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = -3
Query: 474 NVPTILQAFVEGAQRGRQVSAFALETLNFVCGLARLTH-DLVHVGCRRRIV-ICLQVLHN 301
++P L AF+ + + R L +L + L ++ +++ + IV +CL+ + N
Sbjct: 126 HLPLYLYAFLNTSSKSRPFEYLRLTSLGVIGALVKVDDTEVIRFLLQTEIVPLCLRTMEN 185
Query: 300 GPKLGHLFDELVAQK 256
G +L + QK
Sbjct: 186 GSELSKTVATFIVQK 200
>At3g23070.1 68416.m02908 expressed protein contains Pfam domain,
PF04581: Protein of unknown function (DUF578)
Length = 881
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 86 SLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANN 217
S CF F +Y + + KG+TF + N I S + SF NN
Sbjct: 25 SFCFRFLRYSSSISLGSCKGVTFSSR-NDQIASRRFSFSRDCNN 67
>At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein
leucine zipper-containing protein - Lycopersicon
esculentum, EMBL:Z12127 contains Pfam domain PF03081:
Exo70 exocyst complex subunit;
Length = 653
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +2
Query: 104 SKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANNTDNIHNVKNIFSNFCATSSSNK 283
S + N++ V + ++ E + ++ E + NN +N H+ N N +T+ S++
Sbjct: 131 SSWLNRASSVQHRAVSLLDEEFRHLLDRSREEEKKNNNNNNHHDGSNSDHNNSSTNDSDR 190
Query: 284 C 286
C
Sbjct: 191 C 191
>At3g62200.1 68416.m06988 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 673
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -3
Query: 192 LFMETIHLLNSVKKVRPLPSTIKLWLKYFENKKHNESISSRNNCASKHTFSKRSYVLNLK 13
+ + +H+L + +KV P I ++Y + K H + A +H + V LK
Sbjct: 497 VILHALHILKT-EKVMPTEPNISDCIQYGDPKHHGTDVKKALESALEHHMIMMTNVGKLK 555
Query: 12 LY 7
LY
Sbjct: 556 LY 557
>At3g59210.1 68416.m06601 F-box family protein contains F-box domain
Pfam:PF00646
Length = 484
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +2
Query: 176 IVSIKSSFENQANNTD---NIHNVKNIFSNFCATSSSNKCPNLGPLCNTCKHITIRRRHP 346
+ + E N TD I NVK ++ ++ + N C + P+ N H+TI HP
Sbjct: 278 VSDVDEETEMVGNATDLLMGICNVKTLYLSYDTLETLNLCCQVIPVFNNLTHLTI-ESHP 336
>At2g40250.1 68415.m04950 GDSL-motif lipase/hydrolase family protein
similar to family II lipases EXL3 GI:15054386, EXL1
GI:15054382, EXL2 GI:15054384 from [Arabidopsis
thaliana]; contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase
Length = 361
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 506 MRGMPNMGLKKMSQPFCKPSSRVLSEDAKYLHLHSKH 396
+RG GL + P C+P SR + +KYL S H
Sbjct: 305 LRGCCGTGLLEAG-PLCQPLSRTCDDVSKYLFFDSVH 340
>At1g01290.1 68414.m00045 molybdopterin biosynthesis CNX3 protein /
molybdenum cofactor biosynthesis enzyme CNX3 (CNX3)
identical to molybdopterin biosynthesis CNX3 protein
SP|Q39056 from [Arabidopsis thaliana]
Length = 270
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 238 KKHFFEFLRDEFIKQVPQFRTIMQYLQTYYNPTPAPDVDEIMCQSCKPANKIQCFECK 411
K+ F + DEF Q+ + Q +Q+ + P+PD M S ++KI+ K
Sbjct: 22 KRAFSSRIDDEFDPQIMNINELNQEMQSIFGQEPSPDGPGTMDFSELKSSKIEPLRSK 79
>At5g62800.1 68418.m07883 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 348
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 242 NIFSNFCATSSSNKCPNLGPLCN 310
+I NFC SNKCP GP C+
Sbjct: 61 HIVCNFCFAKVSNKCP--GPGCD 81
>At5g59030.1 68418.m07395 copper transporter 1 (COPT1) nearly
identical to SP|Q39065 Copper transporter 1 (COPT1)
{Arabidopsis thaliana}
Length = 170
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Frame = -1
Query: 515 HVHMRGMPNMGLKKMSQPFCKPSSRVLSEDAKYLHLH-SKH*ILFAGLHD*HMISSTSGA 339
H HM GMP S P ++ ++E + H+ H F G + + S G
Sbjct: 3 HDHMHGMPRPSSSSSSSPSSMMNNGSMNEGGGHHHMKMMMHMTFFWGKNTEVLFSGWPGT 62
Query: 338 GVGL*YVCKYCIMVL 294
G+ +C + L
Sbjct: 63 SSGMYALCLIFVFFL 77
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,096,876
Number of Sequences: 28952
Number of extensions: 255986
Number of successful extensions: 857
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -