Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120524.Seq
         (738 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P34050 Cluster: 43 kDa protein; n=5; Nucleopolyhedrovir...   173   5e-42
UniRef50_Q4C3U8 Cluster: Response regulator receiver; n=2; Chroo...    34   4.2  
UniRef50_P08468 Cluster: Protein PET111, mitochondrial precursor...    33   7.3  

>UniRef50_P34050 Cluster: 43 kDa protein; n=5;
           Nucleopolyhedrovirus|Rep: 43 kDa protein - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 363

 Score =  173 bits (420), Expect = 5e-42
 Identities = 78/84 (92%), Positives = 82/84 (97%)
 Frame = +1

Query: 256 RRDNQYAHKWLIKVAGADMGQQILFIIKQVTKKFKTCNLGFHNYYKLFRRCLSMLLFKHK 435
           +RDNQYAHKWLIKV GADMGQQILFIIKQVTKKFKTCNLGFHNYYKLFRRCLS+LLFKHK
Sbjct: 109 QRDNQYAHKWLIKVVGADMGQQILFIIKQVTKKFKTCNLGFHNYYKLFRRCLSILLFKHK 168

Query: 436 EVFIKCLQVILKAAMPVKNKGVVK 507
           EVF++CLQVILKAAMPVK KGVVK
Sbjct: 169 EVFVQCLQVILKAAMPVKKKGVVK 192



 Score =  161 bits (390), Expect = 2e-38
 Identities = 71/85 (83%), Positives = 75/85 (88%)
 Frame = +2

Query: 2   KRYFHTNKVIFEKLDPYATNINRCRKLLTDFFDYCLPKYYRRKNKFALLFRLLEPVIKQT 181
           KRYFHTNKVIFEKLD YATNINRCR+LLTDFFDYCLPKYYRRKNKF LLFRLLEPVIKQ 
Sbjct: 24  KRYFHTNKVIFEKLDSYATNINRCRELLTDFFDYCLPKYYRRKNKFTLLFRLLEPVIKQA 83

Query: 182 GTSSALTAVSDQSRWLEINQFSAWD 256
           G S+  T  +DQ RWLEINQFS W+
Sbjct: 84  GASALTTVSNDQCRWLEINQFSGWE 108



 Score =  153 bits (372), Expect = 3e-36
 Identities = 72/84 (85%), Positives = 79/84 (94%)
 Frame = +3

Query: 486 QEQGRRQINYAFAVTNALHYYIVDNPHLLCKDINVAIKVRRLLIKHEMLPTEKRIRLSFE 665
           +++G  + NYAFAVTNALHYYIVDNPHLLCKDINVAIKVRRLLIKHEMLPTEK+I+LSFE
Sbjct: 186 KKKGVVKSNYAFAVTNALHYYIVDNPHLLCKDINVAIKVRRLLIKHEMLPTEKQIKLSFE 245

Query: 666 KMFQGIEVPLYEKLLLNHMMRIND 737
           K  +GIEVPLYEKLLLNHMMRIND
Sbjct: 246 KCSKGIEVPLYEKLLLNHMMRIND 269


>UniRef50_Q4C3U8 Cluster: Response regulator receiver; n=2;
           Chroococcales|Rep: Response regulator receiver -
           Crocosphaera watsonii
          Length = 552

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 172 QTNRNVVGVNGGIRPKPVARDQSIFRLGRRDNQYAHKWLIK 294
           Q N N+ G+N  I+ +P ++   IF  GR+      +WL+K
Sbjct: 162 QINNNLQGLNENIKNRPTSKLDKIFWKGRKRELLTARWLVK 202


>UniRef50_P08468 Cluster: Protein PET111, mitochondrial precursor;
           n=3; Saccharomyces|Rep: Protein PET111, mitochondrial
           precursor - Saccharomyces cerevisiae (Baker's yeast)
          Length = 800

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = +2

Query: 8   YFHTNKVIFEKLDPYATNINRCRKLLTD-FFDYCLPKYYRRKNKFALLFRLLEPVIKQTG 184
           Y  TN   FE L      I R   +  D  F  C+ +Y+   N+F  LF+    V+K T 
Sbjct: 382 YVSTNN--FENLKVILEKIQRDNDISIDGSFHLCISRYFVNTNQFEGLFKYYRSVVKTTD 439

Query: 185 TSSALTAVSDQSRW 226
             + L     Q  W
Sbjct: 440 GKTRLRPAFIQQLW 453


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 717,267,703
Number of Sequences: 1657284
Number of extensions: 14494660
Number of successful extensions: 36789
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36786
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)