Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120524.Seq
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 28 1.2
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.6
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 27 2.8
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.7
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 26 4.9
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 26 4.9
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 6.4
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch... 26 6.4
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 25 8.5
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|... 25 8.5
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch... 25 8.5
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = -2
Query: 596 YGHVYVFAQQMWVVDNVIVQS--IRYG-KCVVYLTT--PLFLTGIAAFKITCKHFMNTSL 432
+G+V+ FA Q W +D++ + I G C +++ T P+ L G K T K + T L
Sbjct: 500 FGYVFTFACQSW-IDSLGTERTYISIGVLCFIFIATSFPMILCGKRLRKWTAKQYY-TFL 557
Query: 431 CLNNNMDK 408
+ N +D+
Sbjct: 558 NVRNRLDE 565
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 473 PQCPSRTRASSNKLRICRNECFALLHCRQPTFVVQRHKRGH 595
P P+ + S +L I E +A L C+ TFV R RGH
Sbjct: 301 PFLPATGKTLSKRLNIVA-EWYAKLCCQGDTFVAIRRLRGH 340
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 483 RQEQGRRQINYAFAVTNALHYYIVDNPHL 569
R+ G +++ AF V NA HYY+ PHL
Sbjct: 853 RRTAGNKKVWAAFNV-NAPHYYLNTQPHL 880
>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 253
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 633 PTEKRIRLSFEKMFQGIEVPL 695
P E RI++ FE++F+ + +PL
Sbjct: 15 PKEDRIQVKFEQLFESLPLPL 35
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 4.9
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = -3
Query: 148 QQRKFVFASVVFWQAIIKKIRKQFSASI 65
Q+R F+++ ++ W A+ + +R F+ S+
Sbjct: 437 QERNFLYSKIMLWVALDRALRIAFTRSL 464
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 11 FHTNKVIFEKLDPYATNINRCRKL 82
F V+FE L P+ TN+ R KL
Sbjct: 518 FSLGMVLFELLHPFQTNMERATKL 541
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 367 NLGFHNYYKLFRRCLSMLLFKHKEVFIKCLQVI 465
NL H YK+ LS F H +F+K L ++
Sbjct: 12 NLWSHGVYKISSISLSNSFFPHSFMFVKSLHLM 44
>SPAC1952.15c |rec24|mug6|meiotic recombination protein
Rec24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +1
Query: 316 QQILFIIKQVTKKFKTCNLGFHNYYKLFRRCLSMLLFKHKEVFIKCL 456
+Q+ ++ Q+ K+ K C N R S F + E++ CL
Sbjct: 245 EQLEKLLDQIVKRMKICFTYCKNDNPSIRLLYSECFFSYAEIYFPCL 291
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 125 RKNKFALLFRLLEPVIKQTGTSSALTAVSDQSRWLEIN 238
R ++ A LFR +I A S Q RW+ +N
Sbjct: 141 RASRLAKLFRPPYDIISNLSLDEARIEASSQKRWILVN 178
>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 303
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 81 NFLHLLIFVAY 49
NFLHLLIF AY
Sbjct: 228 NFLHLLIFTAY 238
>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 703 FSYSGTSIPWNIFS 662
F+Y GT IPWN F+
Sbjct: 306 FTYYGTIIPWNNFN 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,086,878
Number of Sequences: 5004
Number of extensions: 64468
Number of successful extensions: 195
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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