Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120524.Seq
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0075 - 16253719-16253841,16255076-16255195,16255752-162558...    31   1.3  
11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485     30   1.7  
06_01_0996 + 7746358-7746493,7747102-7747262,7747586-7747647,774...    28   6.7  
03_02_0102 + 5637469-5639064                                           28   6.7  
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921...    28   6.7  
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85...    28   6.7  
01_06_0642 + 30811708-30811768,30812256-30812305,30812455-308129...    28   6.7  
12_01_1033 + 10629897-10632311,10633874-10633879                       28   8.9  

>06_03_0075 -
           16253719-16253841,16255076-16255195,16255752-16255895,
           16256323-16256529,16256832-16256876,16257262-16257313,
           16259756-16259831,16260785-16260893,16260992-16261183
          Length = 355

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 155 LLEPVIKQTGTSSALTAVSDQSRWLEINQFSAWDDETINTRT 280
           ++ PV+K  G S  L     Q  W+  + F A DDE I+ RT
Sbjct: 208 VVAPVLKAAG-SGGLAIGKKQEVWVRFSGFGARDDEWIDVRT 248


>11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485
          Length = 483

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +1

Query: 139 CAAVSSFRTRNQTNRNVVGVNGGIRPKPVARDQSIFRLGRRDNQYAHKWLIKVAGADMGQ 318
           C  +S   T N      + ++G I  K  A+ +         +Q  HK +IK+ G  + +
Sbjct: 197 CFGISKRNTSNSDILPELSIDGRIFTKEEAQKKVFSNAAMIQSQIVHKNIIKILGCCLEE 256

Query: 319 QILFII 336
           +IL +I
Sbjct: 257 EILVLI 262


>06_01_0996 +
           7746358-7746493,7747102-7747262,7747586-7747647,
           7748142-7748595,7748994-7749134,7749444-7749633,
           7749842-7750530,7750605-7750804,7751210-7751375,
           7751850-7752046,7752162-7752396
          Length = 876

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 184 NVVGVNGGIRPKPVARDQSIFRLGRRDNQYAHKWLI 291
           N++G+N GI P   +    + +L   D++Y   W+I
Sbjct: 175 NLLGINDGISPSLTSLGIQLEKLKLADDKYLRMWII 210


>03_02_0102 + 5637469-5639064
          Length = 531

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 205 GIRPKPVARDQSIFRLGRRDNQYAHKW 285
           G+ P P A D +++ LGR   ++AH W
Sbjct: 105 GVAPSPFALDTALYVLGRA-RRFAHMW 130


>02_02_0346 -
           9214365-9214583,9214830-9214919,9215012-9215177,
           9215601-9215911,9215944-9216566,9216779-9216968,
           9217096-9217197,9217285-9217425,9217815-9218411,
           9219126-9219286,9220709-9220824,9221538-9221654,
           9221746-9221808,9221879-9221949
          Length = 988

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 184 NVVGVNGGIRPKPVARDQSIFRLGRRDNQYAHKWLI 291
           N++G+N GI P   +    + +L   D++Y   W+I
Sbjct: 279 NLLGINDGISPSLTSLGIQLEKLKLADDKYLRMWII 314


>02_01_0113 -
           854108-854302,854399-854542,854658-854893,855036-855315,
           856891-857031,857259-857372
          Length = 369

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 522 AVTNALHYYIVDNPHLLCKDINVAIKVRRLLIKHEMLPTEKRIRLSFE 665
           A   A H Y+  +   +C + ++   ++R L  HE +P+ +RI+ SFE
Sbjct: 205 AHNQACHQYVQCD---ICGEKHLKKNIKRHLRAHEEVPSTERIKCSFE 249


>01_06_0642 +
           30811708-30811768,30812256-30812305,30812455-30812926,
           30813237-30813596,30813694-30814101,30814383-30814453,
           30814553-30814629,30814741-30814888,30815878-30816039,
           30816119-30816304
          Length = 664

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 495 GRRQINYAFAVTNALHYYIVDNPHLLCKDI 584
           G+R + Y F   N L+Y++  +P ++ +DI
Sbjct: 431 GQRMLVYDFVPNNTLYYHLHGHPRIIHRDI 460


>12_01_1033 + 10629897-10632311,10633874-10633879
          Length = 806

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +1

Query: 541 TITLSTTHICCAKT*TWP*KSGDC*SSMKCCQPRNELDYRLKKCSKELKFRYTKSFC 711
           T  LSTT + C ++ T     GD  S+++ C+    LD  L++C+  L   +    C
Sbjct: 289 TAALSTTDLSCVRSLTVFGDGGDAVSNLRKCKLLRVLD--LEQCTTALSDDHLADIC 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,870,903
Number of Sequences: 37544
Number of extensions: 380984
Number of successful extensions: 868
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)