Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120524.Seq
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2930| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_6171| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   3.9  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)           29   5.2  
SB_16505| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  

>SB_2930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 607 DC*SSMKCCQPRNELDYRLKKCSKEL 684
           D  S++KCCQ  +E+D  +K+C + L
Sbjct: 310 DADSTLKCCQRLSEMDEFIKRCEQHL 335


>SB_6171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -1

Query: 90  SVSNFLHLLIFVAYGSSFSKITLFV 16
           S S   H+ IFVAYGSS  KI L V
Sbjct: 451 SASKKAHVFIFVAYGSSIRKIMLNV 475


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 105  ACQNTTDAKTNLRCCF 152
            ACQ  TD K N +CCF
Sbjct: 4920 ACQKDTDCKNNHKCCF 4935


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/71 (23%), Positives = 35/71 (49%)
 Frame = +1

Query: 310  MGQQILFIIKQVTKKFKTCNLGFHNYYKLFRRCLSMLLFKHKEVFIKCLQVILKAAMPVK 489
            +G++  +++ +   +  T  LG   +Y + R C  +L    K  ++ CL  IL+  +P K
Sbjct: 2449 LGEKRHYVVVRECNELLT--LGEKRHYVVVRECNELLTLGEKRHYVVCLD-ILQGLIPSK 2505

Query: 490  NKGVVK*TTHL 522
             +  +   +HL
Sbjct: 2506 EEHGILSASHL 2516


>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
          Length = 1064

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 498  RRQINYAFAVTNALHYYIVDNPHLLCKD 581
            R++ N A     AL   +V NPH+LCKD
Sbjct: 966  RKRFNVAITRAQAL-LIVVGNPHVLCKD 992


>SB_16505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 543

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 403 RCLSMLLFKHKEVFIKCLQVILKAA 477
           RC  M + K KE  ++C++V+LKAA
Sbjct: 413 RCGIMSMHKSKEAQLECIKVLLKAA 437


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,722,024
Number of Sequences: 59808
Number of extensions: 483837
Number of successful extensions: 1335
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)