Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120524.Seq
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.3  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.1  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.1  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   9.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -3

Query: 712  NKSFSYSGTSIPWNIFSNDNLIRFSVGSISCLINNRLTFMATFMSLHNKC 563
            ++ + YS   +  N F +D+   F VG  +CL      F+A++  + N+C
Sbjct: 1587 SEDYRYSVRGLCGN-FDHDSTNDF-VGPKNCLFRKPEHFVASYALISNQC 1634


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 603 RRLLIKHEMLPTEKRIRLSFE 665
           RR+ I H +  TE++I++ F+
Sbjct: 37  RRIEIAHALCLTERQIKIWFQ 57


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 603 RRLLIKHEMLPTEKRIRLSFE 665
           RR+ I H +  TE++I++ F+
Sbjct: 37  RRIEIAHALCLTERQIKIWFQ 57


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 603 RRLLIKHEMLPTEKRIRLSFE 665
           RR+ I H +  TE++I++ F+
Sbjct: 37  RRIEIAHALCLTERQIKIWFQ 57


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 603 RRLLIKHEMLPTEKRIRLSFE 665
           RR+ I H +  TE++I++ F+
Sbjct: 299 RRIEIAHALCLTERQIKIWFQ 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,290
Number of Sequences: 438
Number of extensions: 4580
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)