Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120524.Seq
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78830.1 68414.m09189 curculin-like (mannose-binding) lectin ...    31   0.60 
At1g78820.1 68414.m09188 curculin-like (mannose-binding) lectin ...    31   0.60 
At5g32621.1 68418.m03884 expressed protein contains Pfam profile...    30   1.4  
At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr...    30   1.4  
At3g15310.1 68416.m01933 expressed protein                             30   1.8  
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R...    29   3.2  
At2g03880.1 68415.m00350 pentatricopeptide (PPR) repeat-containi...    28   5.6  
At3g47960.1 68416.m05229 proton-dependent oligopeptide transport...    27   9.8  

>At1g78830.1 68414.m09189 curculin-like (mannose-binding) lectin
           family protein similar to S glycoprotein [Brassica rapa]
           GI:2351186; contains Pfam profile PF01453: Lectin
           (probable mannose binding)
          Length = 455

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +2

Query: 56  TNINRCRKLLTDFFDYCLPKYYRRKNKFALLFRLLEPVIKQTGTSS 193
           T++N C K   D    CL  +Y+ K+K  LL  LL  +IK   TSS
Sbjct: 405 TSVNDC-KAKCDRDCKCLGYFYKEKDKKCLLAPLLGTLIKDANTSS 449


>At1g78820.1 68414.m09188 curculin-like (mannose-binding) lectin
           family protein / PAN domain-containing protein similar
           to S locus glycoprotein [Brassica rapa] GI:12246840;
           contains Pfam profile PF01453: Lectin (probable mannose
           binding)
          Length = 455

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +2

Query: 56  TNINRCRKLLTDFFDYCLPKYYRRKNKFALLFRLLEPVIKQTGTSS 193
           T++N C K   D    CL  +Y+ K+K  LL  LL  +IK   TSS
Sbjct: 405 TSVNDC-KAKCDRDCKCLGYFYKEKDKKCLLAPLLGTLIKDANTSS 449


>At5g32621.1 68418.m03884 expressed protein contains Pfam profile
           PF04827: Protein of unknown function (DUF635)
          Length = 625

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 486 QEQGRRQINYAFAVTNALHYYIVDNPHLLCKDINVAIKVRRLLIKHEMLPTEKR 647
           QE  R+ +  AF V  A  ++I+ NP L+     +   ++  +I H M+  ++R
Sbjct: 310 QEAARKDVERAFGVLQA-RFHIIKNPALVWDKEKIGNIMKACIILHNMIVEDER 362


>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
           protein (PEX10) identical to zinc-binding peroxisomal
           integral membrane protein GI:4337011 from [Arabidopsis
           thaliana]
          Length = 381

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 193 GVNGGIRPKPVARDQSIFRLGRRDNQYA 276
           G +GGIR  P+A    I R   +D+QYA
Sbjct: 18  GFHGGIRRFPLAAQPEIMRAAEKDDQYA 45


>At3g15310.1 68416.m01933 expressed protein
          Length = 415

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 486 QEQGRRQINYAFAVTNALHYYIVDNPHLLCKDINVAIKVRRLLIKHEMLPTEKR 647
           QE  R+ +  AF V  A  ++I+ NP L+     +   ++  +I H M+  ++R
Sbjct: 310 QEADRKDVERAFGVLQA-RFHIIKNPALVWDKEKIGNIMKACIILHNMIVEDER 362


>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
           helicase SDE3 [Arabidopsis thaliana] GI:13811296
          Length = 1002

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +3

Query: 522 AVTNALHYY-IVDNPHLLCKDIN 587
           A+T A+    I+ NPH++CKD+N
Sbjct: 782 AITRAISLLVIIGNPHIICKDMN 804


>At2g03880.1 68415.m00350 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 630

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 234 ISSHRLWSDTAVNADDVPVCLITGSKRRNSSANLFLRR*YF 112
           + SH LW+D+A  ++ +  C+   S R     NL  R  YF
Sbjct: 52  LQSHGLWADSATYSELIKCCI---SNRAVHEGNLICRHLYF 89


>At3g47960.1 68416.m05229 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 606

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = -2

Query: 686 FNSLEHFFKR*SNSFLGWQHFMLD-QQSPDFYGHVYVFAQQMWVVDNVIVQSIRYGKCVV 510
           FN      K+  NSF  W  F     Q       VY+ +   W +  +I  ++ +  CV+
Sbjct: 177 FNPKSESGKKGINSFFNWYFFTFTFAQIISLTAVVYIQSNVSWTIGLIIPVALMFLACVI 236

Query: 509 Y 507
           +
Sbjct: 237 F 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,750,226
Number of Sequences: 28952
Number of extensions: 324322
Number of successful extensions: 800
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)