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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120523.Seq
         (732 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41482 Cluster: Uncharacterized 13.3 kDa protein in P6....   102   1e-20
UniRef50_P25695 Cluster: Uncharacterized 41.5 kDa protein in P6....    75   2e-12
UniRef50_P24652 Cluster: Uncharacterized 12.2 kDa protein in P6....    56   9e-07
UniRef50_Q00732 Cluster: p48 protein; n=16; Nucleopolyhedrovirus...    53   6e-06
UniRef50_Q4KSY5 Cluster: P12; n=2; Nucleopolyhedrovirus|Rep: P12...    48   2e-04
UniRef50_P24651 Cluster: p48 protein; n=7; Nucleopolyhedrovirus|...    44   0.005
UniRef50_Q8V5R3 Cluster: ORF92; n=4; Nucleopolyhedrovirus|Rep: O...    40   0.083
UniRef50_Q9YMM4 Cluster: LdOrf-103 peptide; n=1; Lymantria dispa...    38   0.19 
UniRef50_Q0IL13 Cluster: ORF106; n=2; Nucleopolyhedrovirus|Rep: ...    38   0.25 
UniRef50_Q0N414 Cluster: P12; n=1; Clanis bilineata nucleopolyhe...    38   0.33 
UniRef50_Q91BD5 Cluster: Putative uncharacterized protein; n=1; ...    37   0.44 
UniRef50_A0D8P3 Cluster: Chromosome undetermined scaffold_41, wh...    37   0.44 
UniRef50_Q80LL9 Cluster: Budded virus/occlusion-derived virus st...    37   0.59 
UniRef50_Q287K2 Cluster: P12; n=3; Nucleopolyhedrovirus|Rep: P12...    36   1.4  
UniRef50_Q80LL8 Cluster: Putative uncharacterized protein; n=1; ...    35   1.8  
UniRef50_Q68DE3 Cluster: Basic helix-loop-helix domain-containin...    34   3.1  
UniRef50_Q9J871 Cluster: ORF64; n=5; Nucleopolyhedrovirus|Rep: O...    34   4.1  
UniRef50_A0EYY4 Cluster: P12; n=1; Ecotropis obliqua NPV|Rep: P1...    34   4.1  
UniRef50_Q5M6U2 Cluster: Putative sugar transferase; n=2; Campyl...    33   7.2  
UniRef50_Q5ENA4 Cluster: Pectate lyase; n=2; uncultured bacteriu...    33   7.2  
UniRef50_A5FC12 Cluster: Pectate lyase precursor; n=3; Bacteria|...    33   7.2  
UniRef50_Q8NG66 Cluster: Serine/threonine-protein kinase Nek11; ...    33   7.2  
UniRef50_Q6UPR1 Cluster: NIMA-related kinase 5; n=1; Chlamydomon...    33   9.5  
UniRef50_Q3LS85 Cluster: 185/333; n=79; Strongylocentrotus purpu...    33   9.5  

>UniRef50_P41482 Cluster: Uncharacterized 13.3 kDa protein in
           P6.9-VP48 intergenic region; n=7;
           Nucleopolyhedrovirus|Rep: Uncharacterized 13.3 kDa
           protein in P6.9-VP48 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 122

 Score =  102 bits (244), Expect = 1e-20
 Identities = 51/55 (92%), Positives = 53/55 (96%)
 Frame = +1

Query: 256 ESLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQVIVTE 420
           ESLKILSTQSVGAR+LLEPMQAN + IKLNRIETVNVLDFLGSVYDNTIQVIVTE
Sbjct: 68  ESLKILSTQSVGARSLLEPMQANASTIKLNRIETVNVLDFLGSVYDNTIQVIVTE 122



 Score = 85.4 bits (202), Expect = 1e-15
 Identities = 47/67 (70%), Positives = 48/67 (71%)
 Frame = +2

Query: 53  MIASINDIDDMDTGNNMSQTXXXXXXXXXXXXXXQTQMAAVDMLQTINTTASQTAASLLI 232
           MIASIND D MDT +NMSQ               QTQMAAVDMLQTINT ASQTAASLLI
Sbjct: 1   MIASINDTD-MDTDDNMSQARRNRRNRPPARPSAQTQMAAVDMLQTINTAASQTAASLLI 59

Query: 233 NDITPNK 253
           NDITPNK
Sbjct: 60  NDITPNK 66


>UniRef50_P25695 Cluster: Uncharacterized 41.5 kDa protein in
           P6.9-VP48 intergenic region; n=13;
           Nucleopolyhedrovirus|Rep: Uncharacterized 41.5 kDa
           protein in P6.9-VP48 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 361

 Score = 74.9 bits (176), Expect = 2e-12
 Identities = 31/35 (88%), Positives = 35/35 (100%)
 Frame = +1

Query: 508 MAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVARK 612
           +AIWPQ+FPLLCDEHQ+VQLNTDVLINF+MHVARK
Sbjct: 23  LAIWPQLFPLLCDEHQSVQLNTDVLINFMMHVARK 57



 Score = 65.3 bits (152), Expect = 1e-09
 Identities = 40/73 (54%), Positives = 43/73 (58%)
 Frame = +2

Query: 443 MSAIALYLEINKLRLKIDEPMQWRYGPRYFLCSATNIKTCS*TPTC**IL*CTWLANSQN 622
           MSAIALYLEINKLRLKIDEPMQ    P+ F       ++                  SQN
Sbjct: 1   MSAIALYLEINKLRLKIDEPMQLAIWPQLFPLLCDEHQSVQLNTDVLINFMMHVARKSQN 60

Query: 623 TILNNNAAIASQY 661
           TILNNNAAIASQY
Sbjct: 61  TILNNNAAIASQY 73


>UniRef50_P24652 Cluster: Uncharacterized 12.2 kDa protein in
           P6.5-VP48 intergenic region; n=5;
           Nucleopolyhedrovirus|Rep: Uncharacterized 12.2 kDa
           protein in P6.5-VP48 intergenic region - Orgyia
           pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
          Length = 112

 Score = 56.0 bits (129), Expect = 9e-07
 Identities = 27/51 (52%), Positives = 34/51 (66%)
 Frame = +1

Query: 259 SLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQVI 411
           SL  L  QS+ AR L+E +QA    IKLNR +TVNVL FL  VY N ++V+
Sbjct: 59  SLTTLGNQSIAARKLVESLQAGAPTIKLNREDTVNVLKFLNDVYTNQLEVV 109


>UniRef50_Q00732 Cluster: p48 protein; n=16;
           Nucleopolyhedrovirus|Rep: p48 protein - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 387

 Score = 53.2 bits (122), Expect = 6e-06
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = +1

Query: 1   ITKYQLDNEISLLIELNHDCFNK 69
           ITKYQLDNEISLLIELNHDCFNK
Sbjct: 365 ITKYQLDNEISLLIELNHDCFNK 387


>UniRef50_Q4KSY5 Cluster: P12; n=2; Nucleopolyhedrovirus|Rep: P12 -
           Chrysodeixis chalcites nucleopolyhedrovirus
          Length = 117

 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 20/64 (31%), Positives = 40/64 (62%)
 Frame = +1

Query: 220 VVVNQRHYAQ*NESLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNT 399
           V++N  +  Q   +++++S QS  A+ +LE +   E  I+LN ++T+NVL  + ++YDN 
Sbjct: 53  VILNDTN-PQKRNAIRVISKQSAIAKTILEAISNEEQSIRLNTVKTINVLQLMSNIYDNK 111

Query: 400 IQVI 411
             ++
Sbjct: 112 FVIV 115


>UniRef50_P24651 Cluster: p48 protein; n=7;
           Nucleopolyhedrovirus|Rep: p48 protein - Orgyia
           pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
          Length = 411

 Score = 43.6 bits (98), Expect = 0.005
 Identities = 17/23 (73%), Positives = 21/23 (91%)
 Frame = +1

Query: 1   ITKYQLDNEISLLIELNHDCFNK 69
           I  YQLDNEISLL++LNHDCF++
Sbjct: 388 IVDYQLDNEISLLLDLNHDCFDR 410


>UniRef50_Q8V5R3 Cluster: ORF92; n=4; Nucleopolyhedrovirus|Rep:
           ORF92 - Helicoverpa zea SNPV
          Length = 369

 Score = 39.5 bits (88), Expect = 0.083
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = +1

Query: 484 VKNR--RAYAMAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVAR 609
           +KN+  R   M+IWP+ FPLL D +  + L  D L++F++  AR
Sbjct: 13  MKNKIDRRMNMSIWPKFFPLLVDANATLDLTLDELVDFLVTTAR 56


>UniRef50_Q9YMM4 Cluster: LdOrf-103 peptide; n=1; Lymantria dispar
           MNPV|Rep: LdOrf-103 peptide - Lymantria dispar
           multicapsid nuclear polyhedrosis virus (LdMNPV)
          Length = 121

 Score = 38.3 bits (85), Expect = 0.19
 Identities = 18/47 (38%), Positives = 31/47 (65%)
 Frame = +1

Query: 271 LSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQVI 411
           LS  S  A+++L  +Q N+  ++L+  + V VL  L ++YDNTI++I
Sbjct: 75  LSRTSAVAKSILADIQDNQETMRLDAAKGVAVLQLLNNIYDNTIRLI 121


>UniRef50_Q0IL13 Cluster: ORF106; n=2; Nucleopolyhedrovirus|Rep:
           ORF106 - Leucania separata nuclear polyhedrosis virus
           (LsNPV)
          Length = 382

 Score = 37.9 bits (84), Expect = 0.25
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +1

Query: 508 MAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVAR 609
           M IWP+ FPLL D   ++QL  D + +F++  AR
Sbjct: 23  MGIWPKFFPLLVDPQASIQLTIDEINDFLVTTAR 56


>UniRef50_Q0N414 Cluster: P12; n=1; Clanis bilineata
           nucleopolyhedrosis virus|Rep: P12 - Clanis bilineata
           nucleopolyhedrosis virus
          Length = 120

 Score = 37.5 bits (83), Expect = 0.33
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +1

Query: 259 SLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDN 396
           S ++LS  S  A+N+ + +  +   ++LN +  V+VL  L ++YDN
Sbjct: 73  SFEVLSKSSAAAKNIFKDIVDDRDAVRLNTLRAVSVLRLLSNIYDN 118


>UniRef50_Q91BD5 Cluster: Putative uncharacterized protein; n=1;
           Spodoptera litura NPV|Rep: Putative uncharacterized
           protein - Spodoptera litura multicapsid
           nucleopolyhedrovirus (SpltMNPV)
          Length = 121

 Score = 37.1 bits (82), Expect = 0.44
 Identities = 15/52 (28%), Positives = 31/52 (59%)
 Frame = +1

Query: 256 ESLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQVI 411
           E+L++LS QS  A+ ++      + ++K N +ET+ +L  +  +YDN   ++
Sbjct: 69  ETLQVLSNQSNIAKKIVTAANNRDDRVKFNVVETMELLRLMTDLYDNKFLIV 120


>UniRef50_A0D8P3 Cluster: Chromosome undetermined scaffold_41, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_41,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 592

 Score = 37.1 bits (82), Expect = 0.44
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
 Frame = +1

Query: 172 RRHVANHQHHGLSNGRVVVNQRHYAQ*NESLKILSTQSVGA-RNLLEPMQANETKIKLNR 348
           RR     ++    N R   N ++Y Q N+     + Q+    +N    ++  E KI L +
Sbjct: 206 RRFNQRPENEDQQNNRFQSNTQNYQQRNDYRYQNTRQNHNEFQNNARQLEC-ENKI-LTQ 263

Query: 349 IETVNVLDFLGSVYDNTIQVI-VTE*VCVVGHDERYRVVFGNK-QIAVKNRRAYAMAIWP 522
           I+T+ + DF+ S+YD   +V+ + +   ++ +    ++   NK QI +     Y   IW 
Sbjct: 264 IQTLEISDFIQSIYDEEFKVLGIAKKNAIIFYRVNEQIDVNNKTQIQLPENTCYIYQIWS 323

Query: 523 QI 528
           Q+
Sbjct: 324 QV 325


>UniRef50_Q80LL9 Cluster: Budded virus/occlusion-derived virus
           structural protein; n=1; Adoxophyes honmai NPV|Rep:
           Budded virus/occlusion-derived virus structural protein
           - Adoxophyes honmai nucleopolyhedrovirus
          Length = 364

 Score = 36.7 bits (81), Expect = 0.59
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 508 MAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVARKFAKHN 627
           M IWP+ FPLL + +  + L+   L  F+ + AR  A HN
Sbjct: 23  MDIWPKFFPLLSNPNATLNLSMQDLFEFLENTARHAALHN 62



 Score = 34.3 bits (75), Expect = 3.1
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +2

Query: 443 MSAIALYLEINKLRLKIDEPMQWRYGPRYF 532
           MS + L+LEI KL+ KID+ MQ    P++F
Sbjct: 1   MSEVMLFLEIEKLKNKIDKEMQMDIWPKFF 30


>UniRef50_Q287K2 Cluster: P12; n=3; Nucleopolyhedrovirus|Rep: P12 -
           Agrotis segetum nuclear polyhedrosis virus (AsNPV)
          Length = 113

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = +1

Query: 259 SLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQVI 411
           S+ ++   S  A+ +L+ +   E+ ++L  + T+NVL  +  +YDN I V+
Sbjct: 62  SMGVIGQHSAIAKTILDYIDEEES-LRLGTVNTINVLKLMSDIYDNKIPVV 111


>UniRef50_Q80LL8 Cluster: Putative uncharacterized protein; n=1;
           Adoxophyes honmai NPV|Rep: Putative uncharacterized
           protein - Adoxophyes honmai nucleopolyhedrovirus
          Length = 99

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 14/44 (31%), Positives = 28/44 (63%)
 Frame = +1

Query: 271 LSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTI 402
           LS +S  A+ +L+ ++ +++ ++ N I TVN L  L  ++DN +
Sbjct: 54  LSKRSATAKKILKCIEDDQSAVQFNLISTVNFLKLLSDIHDNNV 97


>UniRef50_Q68DE3 Cluster: Basic helix-loop-helix domain-containing
           protein KIAA2018; n=16; Amniota|Rep: Basic
           helix-loop-helix domain-containing protein KIAA2018 -
           Homo sapiens (Human)
          Length = 2242

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 23/80 (28%), Positives = 32/80 (40%)
 Frame = +1

Query: 190 HQHHGLSNGRVVVNQRHYAQ*NESLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVL 369
           HQHH L       N        E+ K+L   +    N+     A  TK+       +++ 
Sbjct: 266 HQHHSLHTCLNDQNSSENKNGQENPKVLKKMTPCVTNIPHSSSATATKVHHGNKSCLSIQ 325

Query: 370 DFLGSVYDNTIQVIVTE*VC 429
           DF G  + NT  V VT  VC
Sbjct: 326 DF-GGDFQNTFVVSVTTTVC 344


>UniRef50_Q9J871 Cluster: ORF64; n=5; Nucleopolyhedrovirus|Rep:
           ORF64 - Spodoptera exigua MNPV
          Length = 388

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 508 MAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVAR 609
           MAIWP+ FPLL D   ++ L+      F++ VA+
Sbjct: 23  MAIWPKFFPLLADPDGHINLSLSEFQQFLVTVAQ 56


>UniRef50_A0EYY4 Cluster: P12; n=1; Ecotropis obliqua NPV|Rep: P12 -
           Ecotropis obliqua NPV
          Length = 140

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +1

Query: 259 SLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDN 396
           + KILS  S  A+ +L+ ++ ++  + L  +   NVL  L ++YDN
Sbjct: 93  TFKILSKVSSSAKGVLKDIEDDKESMPLTTLRATNVLRLLSNIYDN 138


>UniRef50_Q5M6U2 Cluster: Putative sugar transferase; n=2;
           Campylobacter jejuni|Rep: Putative sugar transferase -
           Campylobacter jejuni
          Length = 406

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
 Frame = -1

Query: 636 LFKIVFCEFASHVHYKIYQHVGVQLHVLMFVAEQRKYL-----GPYRHCIGSSIFNRNLF 472
           + K + CE    V+Y   QH+G  L     ++  +KY         +H I + I N N  
Sbjct: 240 IMKKLNCELVEEVYYFEEQHMG--LFFRKKISNNQKYFYSLYNNSLKHQIFNDIINFNTI 297

Query: 471 ISKYNAIALIVTD-DAHLLCNY 409
           +  YN IAL      +H L NY
Sbjct: 298 LKHYNTIALYGGGVQSHSLLNY 319


>UniRef50_Q5ENA4 Cluster: Pectate lyase; n=2; uncultured
           bacterium|Rep: Pectate lyase - uncultured bacterium
          Length = 376

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 502 YAMAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVARKFAK 621
           Y+   WPQ FPL  D  +++  N D +IN +M V R  A+
Sbjct: 104 YSNGGWPQYFPLRDDYSRHITFNDDAMIN-VMTVLRDVAE 142


>UniRef50_A5FC12 Cluster: Pectate lyase precursor; n=3;
           Bacteria|Rep: Pectate lyase precursor - Flavobacterium
           johnsoniae UW101
          Length = 666

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +1

Query: 442 DERYRVVFGNKQIAVKNRRAYAMAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVARKFA 618
           DERY+  F  K +       YA   WPQ +PL    + ++  N D +IN IM+V +  A
Sbjct: 113 DERYKESF-LKGLNYLLEAQYANGGWPQFYPLKKGYYTHITYNDDSMIN-IMNVIKAVA 169


>UniRef50_Q8NG66 Cluster: Serine/threonine-protein kinase Nek11;
           n=32; Eumetazoa|Rep: Serine/threonine-protein kinase
           Nek11 - Homo sapiens (Human)
          Length = 645

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 25/83 (30%), Positives = 39/83 (46%)
 Frame = +1

Query: 172 RRHVANHQHHGLSNGRVVVNQRHYAQ*NESLKILSTQSVGARNLLEPMQANETKIKLNRI 351
           RR+V   +    S G V +     A+  E LK+L   SVG  N  E +QAN     L+++
Sbjct: 27  RRYVLQQKLGSGSFGTVYLVSDKKAKRGEELKVLKEISVGELNPNETVQANLEAQLLSKL 86

Query: 352 ETVNVLDFLGSVYDNTIQVIVTE 420
           +   ++ F  S  +     I+TE
Sbjct: 87  DHPAIVKFHASFVEQDNFCIITE 109


>UniRef50_Q6UPR1 Cluster: NIMA-related kinase 5; n=1; Chlamydomonas
           reinhardtii|Rep: NIMA-related kinase 5 - Chlamydomonas
           reinhardtii
          Length = 812

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +1

Query: 82  YGHWQQHVANTKKPPQQTAGKPFGANANGGRRHVANHQHHG 204
           YGH +Q  A   + P    G P G  A GG    A   HHG
Sbjct: 632 YGHARQSPAPDARRPAAQYGTPPGGRAGGGYGAAAGGSHHG 672


>UniRef50_Q3LS85 Cluster: 185/333; n=79; Strongylocentrotus
           purpuratus|Rep: 185/333 - Strongylocentrotus purpuratus
           (Purple sea urchin)
          Length = 372

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +1

Query: 85  GHWQQHVANTKKPPQ-QTAGKPFG----ANANGGRRHVANHQHHG 204
           GH ++H  + + PPQ +   +PFG     N   GR H  +H HHG
Sbjct: 166 GHGRRHHGHRQGPPQDRPEEQPFGQRNERNEEDGRPHPHHHGHHG 210


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 666,236,879
Number of Sequences: 1657284
Number of extensions: 12590753
Number of successful extensions: 34260
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 32816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34226
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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