Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120523.Seq
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0585 - 18998013-18998306,18998448-18998630,18999048-189990...    31   0.94 
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325...    29   3.8  
02_04_0132 - 20058638-20058907                                         29   3.8  
06_01_1126 - 9277885-9277935,9278129-9278209,9278297-9278350,927...    29   5.0  
01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165     29   5.0  
12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,178...    28   6.6  
11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185...    28   6.6  
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19...    28   6.6  
01_05_0635 - 23847255-23847287,23847397-23848083,23848178-238485...    28   8.8  

>10_08_0585 -
           18998013-18998306,18998448-18998630,18999048-18999089,
           18999226-18999495,18999903-19000454,19000546-19000770,
           19001435-19001640,19001738-19001936,19002166-19002381,
           19002887-19002991,19003127-19003243,19003366-19003548,
           19004292-19004468,19004714-19004816,19005066-19005523
          Length = 1109

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = -1

Query: 564 LHVLMFVAEQRKYLGPYRH---CIGSSIFNRNLFISKYNAIALIVTDDAHLLCNYHLDRV 394
           L+V +FVA+ ++YL P+     C   S + R+L      A++++V  D +    Y L+++
Sbjct: 425 LNVAVFVAQYKEYLHPFAEELLCNKISHWERSLRELAAQALSMLVQYDMNYFAGYALEKL 484

Query: 393 V 391
           V
Sbjct: 485 V 485


>06_01_0456 -
           3249662-3249710,3249838-3250451,3250694-3250780,
           3251509-3252384,3252445-3252534,3252645-3252696,
           3253117-3253168,3253265-3253363,3253444-3253528,
           3253620-3253668,3253749-3253816,3254417-3254482,
           3255690-3255741,3256685-3256767,3256915-3256946,
           3257271-3257466,3258542-3258607,3259797-3259869,
           3260010-3260224
          Length = 967

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 118 KPPQQTAGKPFGANANGG-RRHVANHQHHGLSNGRVVVNQRHYAQ*NESLKILSTQSVG 291
           +PP    G+  GANA+G      ++H H  +SN    + Q   AQ + + ++L +Q  G
Sbjct: 773 RPPPGVPGQAIGANAHGAPPAQQSHHVHRLVSNLMNQLGQATVAQPSTAPQVLPSQPGG 831


>02_04_0132 - 20058638-20058907
          Length = 89

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 218 RPFERPWC*WFATCRRPPFA 159
           +PF  PWC +   C +PPF+
Sbjct: 14  KPFVAPWCRYPLLCNQPPFS 33


>06_01_1126 -
           9277885-9277935,9278129-9278209,9278297-9278350,
           9278433-9278564,9278641-9278715,9279056-9279133,
           9279215-9279327,9279421-9279535,9280565-9280754,
           9281355-9281464,9281559-9281654,9281756-9281818,
           9281911-9281988,9282452-9282564,9282664-9282721,
           9282797-9282920,9282999-9283060,9283131-9283195,
           9283264-9283324,9284242-9284307,9284472-9284531,
           9284830-9284960,9285517-9285592,9285701-9285769,
           9286065-9286112,9286552-9286671,9286918-9287034,
           9287290-9287405,9288348-9288519,9289057-9289100,
           9290359-9290712,9291680-9291806
          Length = 1072

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 140 PAVCCGGFFVFATCCCQCPYHRYHLLKQ 57
           P      F   A+CCC+ P H+ HL  Q
Sbjct: 105 PVDATAPFVASASCCCRHPVHQQHLRLQ 132


>01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165
          Length = 476

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 149 KGLPAVCCG--GFFVFATCCCQCPYHRYHLLKQSWLSSISRDISLS 18
           K LP + CG  G ++F T   +  + +YHL  ++W   I   I  S
Sbjct: 386 KALPTIFCGDTGGYIFHTPPTELFFTQYHLSSRTWSPLIDGSIGNS 431


>12_01_0237 +
           1782593-1782778,1784942-1784996,1785086-1787028,
           1787103-1787261,1787432-1787603,1787705-1788003,
           1788278-1788583
          Length = 1039

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -1

Query: 201 VVLMVCNMSTAAICVCAEGFAGGXXXXXXRVCDMLLPVSISSIS 70
           ++LMVC + + A+ +  EG+  G       +  + L V ++++S
Sbjct: 177 IILMVCALLSVAVGLATEGWPKGMYDGLGIILSIFLVVMVTAVS 220


>11_01_0240 +
           1852186-1852371,1854183-1854237,1854391-1856267,
           1856342-1856500,1856692-1856863,1856965-1857263,
           1857539-1857844
          Length = 1017

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -1

Query: 201 VVLMVCNMSTAAICVCAEGFAGGXXXXXXRVCDMLLPVSISSIS 70
           ++LMVC + + A+ +  EG+  G       +  + L V ++++S
Sbjct: 155 IILMVCALLSVAVGLATEGWPKGMYDGLGIILSIFLVVMVTAVS 198


>06_01_0018 +
           194295-194640,194679-194917,195737-195885,196248-196342,
           196685-196780,197248-197399,198683-198823,199068-199319,
           199463-199603,199686-200003,200146-200232,201025-202006,
           202091-202179,202968-203072,203155-204306,204844-205359,
           205455-205650,206299-207182
          Length = 1979

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/24 (62%), Positives = 16/24 (66%)
 Frame = +3

Query: 657 STRRETRASSSQRQSAHPTPRPVI 728
           ST RETR SSS R  A PTP P +
Sbjct: 13  STARETR-SSSARGHASPTPTPTL 35


>01_05_0635 -
           23847255-23847287,23847397-23848083,23848178-23848540,
           23848633-23848725,23848820-23848870,23849031-23849304,
           23849766-23850595
          Length = 776

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +1

Query: 118 KPPQQTAGKPFGANANGGRRH--VANHQHHGLSNGRVVVNQRHYAQ*NESLKILSTQSVG 291
           +P    A  P  A   GG R   + NH HHGL   ++      Y Q  + L   S+Q  G
Sbjct: 13  QPWSSAAPAPASAPGRGGARREILTNHHHHGLKE-KMRALTLFYEQHKQQL--ASSQGGG 69

Query: 292 AR 297
           AR
Sbjct: 70  AR 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,019,762
Number of Sequences: 37544
Number of extensions: 353853
Number of successful extensions: 993
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)