Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120523.Seq
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39175| Best HMM Match : DUF1378 (HMM E-Value=8)                     33   0.32 
SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19)                   28   6.8  
SB_15221| Best HMM Match : ASC (HMM E-Value=0.0016)                    28   6.8  

>SB_39175| Best HMM Match : DUF1378 (HMM E-Value=8)
          Length = 282

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 22/52 (42%), Positives = 28/52 (53%)
 Frame = +3

Query: 555 KRAVEHRRVDKFYNARGSQIRKTQF*ITTLP*RLSTRRETRASSSQRQSAHP 710
           KR    RR+D    A  S+  K    ITT+P RL+ RRE    +S + SAHP
Sbjct: 123 KRLPFRRRLD----AINSEKSKASQGITTIPSRLTYRREDNTRASSQCSAHP 170


>SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19)
          Length = 605

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +1

Query: 487 KNRRAYAMAIWPQIFPLLCDE---HQNVQLNTDVLINFIMHVARKFAKH 624
           K +R  +  I  + FP   D+   H NV+ NT + + ++  + +K +KH
Sbjct: 508 KEKREASWHIDEEAFPCYRDQATIHPNVESNTSLTVRYLDDIVQKKSKH 556


>SB_15221| Best HMM Match : ASC (HMM E-Value=0.0016)
          Length = 490

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +1

Query: 487 KNRRAYAMAIWPQIFPLLCDE---HQNVQLNTDVLINFIMHVARKFAKH 624
           K +R  +  I  + FP   D+   H NV+ NT + + ++  + +K +KH
Sbjct: 393 KEKREASWHIDEEAFPCYRDQATIHPNVESNTSLTVRYLDDIVQKKSKH 441


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,160,347
Number of Sequences: 59808
Number of extensions: 430986
Number of successful extensions: 1075
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)