Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120523.Seq
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.56 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.0  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   5.2  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   6.8  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    22   6.8  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 85  GHWQQHVANTKKPPQQTAGKPFGANANGGRRHVANHQHHGLS 210
           GHWQ        PP+QT   P     +G RR     +++ +S
Sbjct: 383 GHWQMSCVACSPPPRQT---PPSRKESGRRRRRRTPRYNSVS 421


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 363 VDRFDSIQLNFGLVGLHRFQQIARSDRLSRQN 268
           +DR D++     +  + R  +I R DR+ R N
Sbjct: 498 MDRMDTMDRTDKMSRIDRMDKIDRMDRMDRTN 529


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 247 Q*NESLKILSTQSVGARNLLEPMQANETKIKLNRI 351
           Q N+SLK+          LL  +  N++ +K  R+
Sbjct: 97  QVNDSLKVTRLYEFSDNELLVHISTNKSDVKATRV 131


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 178 HVANHQHHGLSNGRVVVNQRHYAQ*NESLK 267
           H+A H +  L +G + +  RH++Q  E L+
Sbjct: 133 HLAMHDYPPLVSGALHLLFRHFSQRQEVLQ 162


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 178 HVANHQHHGLSNGRVVVNQRHYAQ*NESLK 267
           H+A H +  L +G + +  RH++Q  E L+
Sbjct: 101 HLAMHDYPPLVSGALHLLFRHFSQRQEVLQ 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,396
Number of Sequences: 438
Number of extensions: 3807
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)