Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120522.Seq
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    29   0.89 
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   3.6  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   3.6  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   6.3  

>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 348 HHFIFDAQRIIQCIKEIEGAYG 413
           HH+++D+QRII   + + G YG
Sbjct: 302 HHYLYDSQRIIFVQQSLGGLYG 323


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 353 MVTARTVVIGKTVGFGNVGTLIIVIKKFILYSILYISK 240
           +V   ++++G  + +GN+GTLI   + F  Y   Y+SK
Sbjct: 332 LVPTLSLLLGNPIPYGNLGTLI--PEPFYYYGDEYLSK 367


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -1

Query: 685 KNLSSVDISLQTLHSYKTELSTNKFITFNSFINS 584
           KNLS++   L+T +S+  ELS +  IT ++  N+
Sbjct: 303 KNLSTIQSPLKTSNSFFKELSPHSQITLSNVKNN 336


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 685  KNLSSVDISLQ-TLHSYKTELSTNKFITFNSFINSFQLFNKQQAI 554
            K  S VD + Q T++  KTEL ++ + T  SF+    + N+ Q +
Sbjct: 1379 KTFSFVDCTRQITIYLAKTELLSDLYSTLLSFVCPANVSNENQEV 1423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,066
Number of Sequences: 5004
Number of extensions: 60706
Number of successful extensions: 179
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)