Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120522.Seq
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1125 - 8920590-8924372                                           31   1.2  
05_03_0259 - 11161447-11161706,11161764-11164266                       30   2.1  
06_01_1000 - 7778907-7780721                                           29   4.9  
06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,706...    29   4.9  
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112     28   8.6  

>01_01_1125 - 8920590-8924372
          Length = 1260

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = -2

Query: 327  REDGRVWQ-CRHIDHSNKKIYSLFYIVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVK 151
            + +GR+   C  +  + +  YS+  +  + + +   CK G    AL LC  +   G  ++
Sbjct: 867  KREGRILDACNFLKEAEQNGYSVD-LAMYSILVEGLCKSGYLEKALDLCESMKEEG--IQ 923

Query: 150  ENKVINHYLLSFCASGRCLARIWR 79
             N VI++ +L+      CL   +R
Sbjct: 924  PNIVIHNSVLNGLCQQGCLTEAFR 947


>05_03_0259 - 11161447-11161706,11161764-11164266
          Length = 920

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = -2

Query: 324 EDGRVWQCRHIDHSNKKIYSLFYI-VHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKE 148
           +DGR+ +   +    K+   +    V + M I  YC+RGR   A  +  ++   G+HV  
Sbjct: 300 KDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHV-N 358

Query: 147 NKVINHYLLSFCASGR 100
             V N  +   C  GR
Sbjct: 359 LFVYNTMINGLCKLGR 374


>06_01_1000 - 7778907-7780721
          Length = 604

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 255 IVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSF-CASG 103
           ++ F   +  YCK G+   AL +   +   G+H   N VI + L+ F C  G
Sbjct: 458 VITFGTLVHGYCKVGKIDEALRILRSMDESGIH--PNNVIYNTLIDFLCKRG 507


>06_01_0916 +
           7058991-7059050,7060057-7061235,7061778-7063481,
           7063557-7064432,7064457-7064660,7065039-7065143,
           7065407-7065496,7066066-7066176,7066349-7066780
          Length = 1586

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +2

Query: 455 ETVARRVEANQKLFCVLFKNINSMQMYVNELISNCLLFIEKLETINKTV 601
           ET   +    Q+L+C LF+N+N     V+EL   C L  + +E IN+++
Sbjct: 318 ETAGSKERFRQRLWCFLFENLNRA---VDELYLLCELECD-MEQINESI 362


>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
          Length = 1372

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -2

Query: 252 VHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCASG 103
           V +   +  +CK G    AL   VD+Y  G+ V  + + N  L SF   G
Sbjct: 510 VLYTTLVFYFCKAGHAKEALKYFVDIYRSGL-VANSVIHNALLCSFYREG 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,893,756
Number of Sequences: 37544
Number of extensions: 354966
Number of successful extensions: 1003
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)