Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120522.Seq
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45396| Best HMM Match : DUF1491 (HMM E-Value=4.1)                   29   5.0  
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_13904| Best HMM Match : Peptidase_M1 (HMM E-Value=3.7e-08)          28   6.7  
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)          28   8.8  
SB_8593| Best HMM Match : Defensin_beta (HMM E-Value=6.2)              28   8.8  

>SB_45396| Best HMM Match : DUF1491 (HMM E-Value=4.1)
          Length = 88

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 247 FPNVYRQLLQTRPNARRIAPLRRFVCRRCTCERKQSYQSLPAELLR 110
           F  VY+      P A ++ P++++ C   TC   Q  Q+    L++
Sbjct: 26  FGTVYKATWAGTPVAVKVIPIKKYTCAPQTCRTAQEEQATLVALIK 71


>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 536  VNELISNCLLFIEKLETINKTVK 604
            +  +++NCL FIE  ETIN+  K
Sbjct: 1043 IPHIVANCLQFIETYETINRARK 1065


>SB_13904| Best HMM Match : Peptidase_M1 (HMM E-Value=3.7e-08)
          Length = 326

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -1

Query: 238 VYRQLLQTRPNARRIAPLRRFVCRRCTCERKQSYQSLPAELLRKRTLPRTNMAMTHSLTS 59
           +YR   + RPN  +  P RR      TC +K+   +L      +++L +T      SL +
Sbjct: 142 LYRSSFE-RPNGSKRLPYRRCFVNFMTCNQKRKTVTLAISSQWRKSLKKTKSPRYQSLKT 200

Query: 58  LYF 50
             F
Sbjct: 201 TMF 203


>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
          Length = 1039

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 43  VQENIMTSNCASSPYSCEATSAC 111
           +QE+I+   CA   ++CE T+ C
Sbjct: 892 LQESIVKGGCAEGQFACEKTNKC 914


>SB_8593| Best HMM Match : Defensin_beta (HMM E-Value=6.2)
          Length = 87

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 98  QRPLAQKLSR**LITLFSFTCTPPTYKSTQRCNAACVRPRLQ 223
           +R + Q  +R    T  S TC+PPT      CN  C    +Q
Sbjct: 7   KREIEQANARPLACTAESQTCSPPTKSIGSECNTECAEADVQ 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,790,974
Number of Sequences: 59808
Number of extensions: 453539
Number of successful extensions: 1147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)