Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120522.Seq
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97002-11|AAY86259.1| 121|Caenorhabditis elegans Hypothetical p... 32 0.48
Z81053-2|CAB02878.2| 202|Caenorhabditis elegans Hypothetical pr... 31 1.1
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 31 1.1
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 31 1.1
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 31 1.1
U97012-7|AAK39139.2| 387|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z48638-8|CAA88568.1| 237|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z82276-1|CAB05238.1| 319|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z50070-4|CAA90394.2| 172|Caenorhabditis elegans Hypothetical pr... 28 7.8
AF099922-1|AAK21410.2| 509|Caenorhabditis elegans Hypothetical ... 28 7.8
>U97002-11|AAY86259.1| 121|Caenorhabditis elegans Hypothetical
protein K09H11.11 protein.
Length = 121
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -1
Query: 481 SFNASRNCFKYG*NTITLPRSRTPYAP 401
+FN R CFKY +I+ PRSR P+ P
Sbjct: 70 AFNRLRKCFKY--RSISPPRSRAPFPP 94
>Z81053-2|CAB02878.2| 202|Caenorhabditis elegans Hypothetical
protein E02A10.3 protein.
Length = 202
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +2
Query: 494 FCVLFKNINSMQMYVNELISNCLLFIEKLETINKTVKSYEFVRRQFG 634
FCV+ + + + NE++ C ++ E + K + F+ R+ G
Sbjct: 114 FCVVMRRLTMKKSNWNEVVKECFTVFDRSENGGISKKDFRFILRELG 160
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 208 SAAFAIIDDKHLEMYNIE*RINFFITMINVPTLPNPTVFPMTTVRAVT 351
S AF + L Y E N ++ PT P PT +P+TTV ++
Sbjct: 432 SYAFFVYGKNKLYSYGYEGGANKPTVVLAPPTTPGPTFYPVTTVSTMS 479
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 208 SAAFAIIDDKHLEMYNIE*RINFFITMINVPTLPNPTVFPMTTVRAVT 351
S AF + L Y E N ++ PT P PT +P+TTV ++
Sbjct: 432 SYAFFVYGKNKLYSYGYEGGANKPTVVLAPPTTPGPTFYPVTTVSTMS 479
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 208 SAAFAIIDDKHLEMYNIE*RINFFITMINVPTLPNPTVFPMTTVRAVT 351
S AF + L Y E N ++ PT P PT +P+TTV ++
Sbjct: 432 SYAFFVYGKNKLYSYGYEGGANKPTVVLAPPTTPGPTFYPVTTVSTMS 479
>U97012-7|AAK39139.2| 387|Caenorhabditis elegans Hypothetical
protein C04E6.4 protein.
Length = 387
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 548 ISNCLLFIEKLETINKTVKSYEFVRRQFGFVRMQCL*RNIY 670
+ NCLL I ++ K KS F+ + F + QC +N++
Sbjct: 3 VCNCLLLIVIFQSAFKESKSKNFIEIKISFDKNQCNTKNVW 43
>Z48638-8|CAA88568.1| 237|Caenorhabditis elegans Hypothetical
protein ZK892.6 protein.
Length = 237
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 115 LRKRTLPRTNMAMTHSLTSLYFPGRSARDCWFL 17
L+K P+TN M H L + G+S++ C F+
Sbjct: 21 LKKGNFPKTNDGMQHDLVNDVLGGKSSKYCPFI 53
>Z82276-1|CAB05238.1| 319|Caenorhabditis elegans Hypothetical
protein K03D3.1 protein.
Length = 319
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = -3
Query: 323 KTVGFGNVGTLIIVIKKFILYSILYISKCLSSIIANAAERTPHCTFASICMSAVYM*KKT 144
K G + G I + +LY++L++S I +A R H A CM Y+ +T
Sbjct: 179 KEEGLTHFGIYFITVV-LVLYALLFLSTVFYIPIIISARRLSHVDSAQQCMVQKYIYWQT 237
Query: 143 KLSIITC 123
L++ C
Sbjct: 238 -LTVFIC 243
>Z50070-4|CAA90394.2| 172|Caenorhabditis elegans Hypothetical
protein F43G6.3 protein.
Length = 172
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 104 DVASHEYGDDAQFDVIIFS 48
D++ +E GDDA FDV+I S
Sbjct: 11 DLSDNELGDDASFDVLISS 29
>AF099922-1|AAK21410.2| 509|Caenorhabditis elegans Hypothetical
protein F56F11.5 protein.
Length = 509
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 491 LFCVLFKNINSMQMYVNELISNCLLFIEKLETINKTVKSYEFVRRQFGFV 640
L+CVLF + E I + F+ L+ + KTV + F+ F FV
Sbjct: 308 LYCVLFITATVSTLRSLEFIKSLGFFVHILKKMMKTVGMFVFIFCTFWFV 357
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,481,088
Number of Sequences: 27780
Number of extensions: 353432
Number of successful extensions: 1007
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -