Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120522.Seq
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.9  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.9  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -2

Query: 264 LFYIVH---FQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCASGRCL 94
           +FYI+    F+  + +YC    TH    +   + V   +V+E+  +   LL+F     CL
Sbjct: 345 VFYIISRYVFRSALEDYCNIVATHLVCGILGSILVPFFYVQEDDDVKLVLLNFGWQMICL 404


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 563 LFIEKLETINKTVKSYEFVRRQFGF 637
           +F EK+ET   + K + +  R FGF
Sbjct: 576 IFYEKIETSLNSDKPFTYNERIFGF 600



 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 250 YNIE*RINFFITMINVPT 303
           YN+E ++N+FI  I + T
Sbjct: 214 YNLENKLNYFIEDIGLNT 231


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 563 LFIEKLETINKTVKSYEFVRRQFGF 637
           +F EK+ET   + K + +  R FGF
Sbjct: 576 IFYEKIETSLNSDKPFTYNERIFGF 600


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -1

Query: 676 SSVDISLQTLHSYKTELSTNKFITFNSFINSFQ 578
           + +D++++TL     + + N F+T  S +  F+
Sbjct: 660 TEIDVAIKTLKPGSADKARNDFLTEASIMGQFE 692


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 282 YYDQCADIAKPDRLPDDDGACCHHFIFDAQR 374
           +Y++ A   +PDR   D G      +FD  R
Sbjct: 246 HYERRATPPQPDRTSKDQGTIGESEVFDTTR 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,372
Number of Sequences: 438
Number of extensions: 4057
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)