Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120522.Seq
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79080.1 68414.m09220 pentatricopeptide (PPR) repeat-containi...    29   4.1  
At2g34650.1 68415.m04256 protein kinase PINOID (PID) identical t...    28   7.2  

>At1g79080.1 68414.m09220 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 576

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 255 IVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLL-SFCASGR 100
           +V + + +  +CK GRT  A+ L  +L   G   K N V  + LL   C  GR
Sbjct: 246 LVSYNVLLTGFCKEGRTDDAMALFRELPAKG--FKANVVSYNILLRCLCCDGR 296


>At2g34650.1 68415.m04256 protein kinase PINOID (PID) identical to
           protein kinase PINOID [Arabidopsis thaliana]
           gi|7208442|gb|AAF40202; contains protein kinase domain,
           Pfam:PF00069
          Length = 438

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -2

Query: 336 RRHREDGRVWQCRHIDHSN-KKIYSLFYIVHFQMFIVNYCKRGRTHAALH 190
           + HR +      + +DH     +Y+ F   HF   ++ YC  G  H+  H
Sbjct: 121 KMHRAEMEKTILKMLDHPFLPTLYAEFEASHFSCIVMEYCSGGDLHSLRH 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,834,678
Number of Sequences: 28952
Number of extensions: 297584
Number of successful extensions: 833
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)