Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120521.Seq
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 99 8e-22
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 73 4e-14
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 71 2e-13
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 53 5e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 52 7e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 51 2e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 51 2e-07
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 51 2e-07
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 48 2e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 47 2e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 47 2e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 46 4e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 46 8e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 45 1e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 45 1e-05
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 42 1e-04
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 42 1e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 40 3e-04
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 40 5e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 40 5e-04
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 38 0.002
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 35 0.011
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 35 0.014
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 35 0.014
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 34 0.019
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 27 2.8
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 4.9
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 26 6.5
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 98.7 bits (235), Expect = 8e-22
Identities = 57/158 (36%), Positives = 85/158 (53%), Gaps = 5/158 (3%)
Frame = +3
Query: 258 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 437
+L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 438 KTMGYKEPTPIQAQGWPIAMSGKN*LA*LKRVPAKRWPTSCQPLCT*TTNRLF-----GE 602
K +G++ PTPIQ Q WP+AMSG++ + + + + + C P + G
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRD-MVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGP 196
Query: 603 VMVRLLWSWRLPES*HNKFSKLLQIFGHTSYVRNTCVF 716
+++ L + L + +K FG +S +RNTCV+
Sbjct: 197 IVLVLAPTRELAVQIQQECTK----FGKSSRIRNTCVY 230
Score = 85.8 bits (203), Expect = 6e-18
Identities = 40/59 (67%), Positives = 47/59 (79%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 679
+++VG++ TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ F
Sbjct: 160 RDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKF 218
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 72.9 bits (171), Expect = 4e-14
Identities = 29/52 (55%), Positives = 44/52 (84%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 658
++++GVA+TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI
Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQI 507
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 431
++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 432 GVKTMGYKEPTPIQAQGWPIAMSGKN 509
+ ++GY++PT IQAQ P SG++
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGRD 457
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 70.5 bits (165), Expect = 2e-13
Identities = 33/56 (58%), Positives = 44/56 (78%), Gaps = 3/56 (5%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQ 661
K+L+G+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Score = 42.7 bits (96), Expect = 5e-05
Identities = 16/57 (28%), Positives = 35/57 (61%)
Frame = +3
Query: 339 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKD 288
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 52.8 bits (121), Expect = 5e-08
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 667
K+LV A+TGSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
Score = 30.7 bits (66), Expect = 0.23
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = +3
Query: 366 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+ +A
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVA 56
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 52.4 bits (120), Expect = 7e-08
Identities = 28/52 (53%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Frame = +2
Query: 521 AQTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQQIQQVA 670
AQTGSGKTLAY+LP + + P R G A+++APTREL QQI VA
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVA 236
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 51.2 bits (117), Expect = 2e-07
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 664
++++G+AQTGSGKT A+ LP I + NN P A+VLAPTRELA QI +
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISE 132
Score = 30.3 bits (65), Expect = 0.30
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
F+E D + + + +G+K PTPIQ + P+ ++ ++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRD 85
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 50.8 bits (116), Expect = 2e-07
Identities = 29/58 (50%), Positives = 36/58 (62%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 676
K+LV A TGSGKTLAY+LP + + G G AL++APTRELA QI V +
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
Score = 31.1 bits (67), Expect = 0.17
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
F+ N +++ V G+K+ TP+QA P+ + K+
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKD 40
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 50.8 bits (116), Expect = 2e-07
Identities = 25/59 (42%), Positives = 38/59 (64%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 679
+++VG+A+TGSGKT A+++P I H+ + AL+L+P RELA Q +V DF
Sbjct: 107 RDVVGMARTGSGKTAAFVIPMIEHLKS---TLANSNTRALILSPNRELALQTVKVVKDF 162
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
F+ + + + G+K PTPIQ + P+ + G++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRD 108
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 670
K++VG A TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVA 350
Score = 30.3 bits (65), Expect = 0.30
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
F+ N + +G+ +G++ PT IQ + P+A+ GK+
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKD 298
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 47.2 bits (107), Expect = 2e-06
Identities = 25/51 (49%), Positives = 37/51 (72%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 655
++++G A+TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q
Sbjct: 77 RDILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQ 126
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 47.2 bits (107), Expect = 2e-06
Identities = 23/51 (45%), Positives = 37/51 (72%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 655
+++VG+A+TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q
Sbjct: 203 RDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +3
Query: 384 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
PI F+E + +++G+K YKEPTPIQA WP ++G++
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRD 204
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 46.4 bits (105), Expect = 4e-06
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +2
Query: 437 KDNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAI--VHINNQPPIRRGDG 610
K+ G + + ++++G A+TGSGKTLA+++P I ++ P R G G
Sbjct: 105 KEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG 163
Query: 611 PIALVLAPTRELAQQIQQVAAD 676
++++PTRELA QI VA +
Sbjct: 164 --VIIISPTRELALQIFGVAKE 183
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 45.6 bits (103), Expect = 8e-06
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +2
Query: 446 GLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 619
G + S + ++ + +++G A TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 620 LVLAPTRELAQQIQQ 664
LV+APTRELA QI Q
Sbjct: 196 LVVAPTRELAHQICQ 210
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 45.2 bits (102), Expect = 1e-05
Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI-QQVAA 673
+ +G A+TGSGKT A+ LP I + P G AL+L PTRELA QI +Q AA
Sbjct: 45 RNCIGGAKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAA 97
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 670
++L+ A TGSGKT+AY+ P + + P G A+++APTREL +QI + A
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQA 135
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 41.5 bits (93), Expect = 1e-04
Identities = 25/74 (33%), Positives = 42/74 (56%)
Frame = +2
Query: 446 GLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 625
G +R A + ++++ AQ+G+GKT + + + I+ +++ AL+
Sbjct: 38 GFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALI 92
Query: 626 LAPTRELAQQIQQV 667
LAPTRELAQQIQ+V
Sbjct: 93 LAPTRELAQQIQKV 106
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/58 (36%), Positives = 35/58 (60%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 676
+ ++G +Q+G+GKT A+ L + ++ P P A+ LAP+RELA+QI V +
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTE 206
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 354 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++ +A
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMA 211
Score = 37.1 bits (82), Expect = 0.003
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 13/72 (18%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRE 643
++L+ AQTGSGKT ++ P + + + P P+ + G P L+LAPTRE
Sbjct: 207 RDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRE 266
Query: 644 LAQQIQQVAADF 679
L QI + + F
Sbjct: 267 LVCQIHEESRKF 278
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 39.5 bits (88), Expect = 5e-04
Identities = 21/82 (25%), Positives = 41/82 (50%)
Frame = +2
Query: 446 GLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 625
G +R + + ++++ A+ G+GKT A+++P++ ++ + + L+
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLI 117
Query: 626 LAPTRELAQQIQQVAADFWTHI 691
L PTRELA Q QV H+
Sbjct: 118 LVPTRELALQTSQVCKTLGKHM 139
Score = 33.9 bits (74), Expect = 0.025
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*LKRVPAK 542
FE+ + G+ G++ P+PIQ + PIA+SG++ LA K K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 39.5 bits (88), Expect = 5e-04
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +2
Query: 521 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 670
A+TG+GKTLA++L A + P +++L+PTRELA QI + A
Sbjct: 83 AKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEA 132
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 37.5 bits (83), Expect = 0.002
Identities = 25/82 (30%), Positives = 41/82 (50%)
Frame = +2
Query: 446 GLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 625
G + A S + ++++ AQ+G+GKT + + + I+ +R AL+
Sbjct: 40 GYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALI 94
Query: 626 LAPTRELAQQIQQVAADFWTHI 691
L+PTRELA QIQ V H+
Sbjct: 95 LSPTRELAVQIQNVVLALGDHM 116
Score = 32.3 bits (70), Expect = 0.075
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 330 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 479
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 35.1 bits (77), Expect = 0.011
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Frame = +2
Query: 521 AQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 658
A TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 180 AATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 34.7 bits (76), Expect = 0.014
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 509 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 658
L+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1209 LITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 34.7 bits (76), Expect = 0.014
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 509 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 658
L+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1209 LITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 34.3 bits (75), Expect = 0.019
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +2
Query: 440 DNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 619
D+G + + S + +++ A++G GKT ++L + I P+ DG ++
Sbjct: 68 DSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---DGEVS 121
Query: 620 -LVLAPTRELAQQIQQVAADF 679
LVL TRELA QI+ A F
Sbjct: 122 VLVLCHTRELAFQIKNEYARF 142
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Frame = +3
Query: 225 SEHASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEY------RNNHEVTVSGVEVHNP 386
++ A R+G + +Q F + F+D P + + + NH+ V+ V+ P
Sbjct: 255 TKSAVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIADLITTCLGGRNHKCAVAFVKTGKP 314
Query: 387 IQYFEEANFPDYVQQGVKT 443
+ E+ QG T
Sbjct: 315 MHVVEQELLDGQKLQGAAT 333
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 652
K++ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 535 KDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 6.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 648 HNKFSKLLQIFGHTSYVRNTC 710
H K+ K+ ++ GHT +R+ C
Sbjct: 202 HGKWKKVAELPGHTDLIRDIC 222
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 447 PLSLHLVAHNQENL--LLQSIE 388
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,409
Number of Sequences: 5004
Number of extensions: 59906
Number of successful extensions: 203
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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