Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120521.Seq
(745 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 100 9e-22
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 93 2e-19
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 93 2e-19
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 80 2e-15
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 80 2e-15
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 75 7e-14
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 70 1e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 70 1e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 70 1e-12
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 68 8e-12
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 63 2e-10
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 62 3e-10
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 60 2e-09
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 58 8e-09
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 56 2e-08
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 54 1e-07
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 53 2e-07
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 53 2e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 52 3e-07
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 51 7e-07
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 51 7e-07
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 51 9e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 50 1e-06
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 50 2e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 49 4e-06
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 49 4e-06
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 49 4e-06
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 49 4e-06
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 48 5e-06
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 48 9e-06
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 47 2e-05
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 47 2e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 46 2e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 46 3e-05
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 46 3e-05
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 45 6e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 45 6e-05
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 44 8e-05
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 44 8e-05
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 44 1e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 43 2e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 42 3e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 42 4e-04
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 42 4e-04
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 42 4e-04
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 42 4e-04
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 39 0.003
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 39 0.004
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.004
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 39 0.004
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 38 0.007
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 37 0.016
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 36 0.021
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 36 0.021
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 35 0.065
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 35 0.065
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 34 0.11
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 33 0.15
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 33 0.15
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 33 0.15
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 33 0.26
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 32 0.35
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 32 0.46
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 31 1.1
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 29 2.5
At5g43990.2 68418.m05382 SET domain-containing protein identical... 29 3.3
At5g43990.1 68418.m05383 SET domain-containing protein identical... 29 3.3
At2g33420.1 68415.m04096 expressed protein 28 5.7
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 28 7.5
At5g25520.2 68418.m03037 transcription elongation factor-related... 28 7.5
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote... 28 7.5
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 7.5
At5g48950.2 68418.m06055 thioesterase family protein contains Pf... 27 9.9
At3g03305.1 68416.m00328 calcineurin-like phosphoesterase family... 27 9.9
At2g25460.1 68415.m03049 expressed protein 27 9.9
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 27 9.9
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 27 9.9
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 27 9.9
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 100 bits (240), Expect = 9e-22
Identities = 46/92 (50%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Frame = +3
Query: 237 SPR-LGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 413
SPR L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 414 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
PDYV + VK G+ EPTPIQ+QGWP+AM G++
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRD 138
Score = 92.7 bits (220), Expect = 2e-19
Identities = 41/59 (69%), Positives = 51/59 (86%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 679
++L+G+A+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ F
Sbjct: 137 RDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKF 195
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 92.7 bits (220), Expect = 2e-19
Identities = 38/90 (42%), Positives = 59/90 (65%)
Frame = +3
Query: 240 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 419
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 420 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
+ + + +G+ EPTPIQAQGWP+A+ G++
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRD 204
Score = 84.6 bits (200), Expect = 6e-17
Identities = 36/59 (61%), Positives = 50/59 (84%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 679
++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + F
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKF 261
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 92.7 bits (220), Expect = 2e-19
Identities = 38/90 (42%), Positives = 59/90 (65%)
Frame = +3
Query: 240 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 419
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 420 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
+ + + +G+ EPTPIQAQGWP+A+ G++
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRD 204
Score = 84.6 bits (200), Expect = 6e-17
Identities = 36/59 (61%), Positives = 50/59 (84%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 679
++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + F
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKF 261
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 79.8 bits (188), Expect = 2e-15
Identities = 33/52 (63%), Positives = 43/52 (82%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 658
++ +GVA+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI
Sbjct: 434 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 485
Score = 64.1 bits (149), Expect = 9e-11
Identities = 29/85 (34%), Positives = 46/85 (54%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 434
+ +PF KNFY + + + V YR E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN 509
+K + Y++P PIQAQ PI MSG++
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRD 435
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 79.8 bits (188), Expect = 2e-15
Identities = 33/52 (63%), Positives = 43/52 (82%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 658
++ +GVA+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI
Sbjct: 567 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 618
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/85 (32%), Positives = 46/85 (54%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 434
+ +PF KNFY + + + EV YR E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN 509
+K + Y++P PIQ Q PI MSG++
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRD 568
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 74.5 bits (175), Expect = 7e-14
Identities = 32/59 (54%), Positives = 46/59 (77%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 679
++++G+A+TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F
Sbjct: 266 RDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKF 324
Score = 71.3 bits (167), Expect = 6e-13
Identities = 28/85 (32%), Positives = 48/85 (56%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 434
+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F +
Sbjct: 183 IDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSA 242
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN 509
+K Y++PT IQ Q PI +SG++
Sbjct: 243 IKKQAYEKPTAIQCQALPIVLSGRD 267
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.1 bits (164), Expect = 1e-12
Identities = 33/76 (43%), Positives = 44/76 (57%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 470
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 471 QAQGWPIAMSGKN*LA 518
QAQ WPIAM G++ +A
Sbjct: 185 QAQSWPIAMQGRDIVA 200
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/59 (49%), Positives = 40/59 (67%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 679
+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A F
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELATQIQEEAVKF 253
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.1 bits (164), Expect = 1e-12
Identities = 33/76 (43%), Positives = 44/76 (57%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 470
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 471 QAQGWPIAMSGKN*LA 518
QAQ WPIAM G++ +A
Sbjct: 185 QAQSWPIAMQGRDIVA 200
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/59 (49%), Positives = 40/59 (67%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 679
+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A F
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELATQIQEEAVKF 253
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 70.1 bits (164), Expect = 1e-12
Identities = 33/76 (43%), Positives = 44/76 (57%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 470
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 471 QAQGWPIAMSGKN*LA 518
QAQ WPIAM G++ +A
Sbjct: 185 QAQSWPIAMQGRDIVA 200
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/59 (49%), Positives = 40/59 (67%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 679
+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A F
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELATQIQEEAVKF 253
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 67.7 bits (158), Expect = 8e-12
Identities = 29/62 (46%), Positives = 46/62 (74%), Gaps = 3/62 (4%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAA 673
++++G+A+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETV 410
Query: 674 DF 679
F
Sbjct: 411 KF 412
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +3
Query: 336 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRD 352
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Frame = +2
Query: 437 KDNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGD 607
KD G+ L ++++G+A TGSGKTL ++LP I+ + PI G+
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGE 172
Query: 608 GPIALVLAPTRELAQQIQQVAADF 679
GPIALV+ P+RELA+Q V F
Sbjct: 173 GPIALVICPSRELAKQTYDVVEQF 196
Score = 54.4 bits (125), Expect = 8e-08
Identities = 27/87 (31%), Positives = 47/87 (54%)
Frame = +3
Query: 249 GFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ 428
G +P + ++ P V K S +++ R +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 429 QGVKTMGYKEPTPIQAQGWPIAMSGKN 509
+ +K G PTPIQ QG P+ +SG++
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRD 136
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 62.5 bits (145), Expect = 3e-10
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Frame = +3
Query: 273 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 440
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 441 TMGYKEPTPIQAQGWPIAMSGKN*LA 518
+ G+ PTPIQAQ WPIA+ ++ +A
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVA 477
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/59 (49%), Positives = 41/59 (69%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 679
+++V +A+TGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A F
Sbjct: 473 RDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRF 530
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Frame = +2
Query: 437 KDNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGD 607
K+ G+ + L ++++G+A TGSGKTL ++LP I+ + PI G+
Sbjct: 162 KEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGE 221
Query: 608 GPIALVLAPTRELAQQIQQVAADF 679
GPI L++ P+RELA+Q +V F
Sbjct: 222 GPIGLIVCPSRELARQTYEVVEQF 245
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/75 (30%), Positives = 41/75 (54%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 464
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 465 PIQAQGWPIAMSGKN 509
PIQ QG P+ ++G++
Sbjct: 171 PIQVQGLPVILAGRD 185
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 57.6 bits (133), Expect = 8e-09
Identities = 29/59 (49%), Positives = 39/59 (66%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 679
+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A F
Sbjct: 267 RDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSR-MGPTILVLSPTRELATQIQVEALKF 324
Score = 35.5 bits (78), Expect = 0.037
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
V + G+ P+PIQAQ WPIAM ++ +A
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVA 271
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 330 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 419
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQV 667
++L+G+A+TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V
Sbjct: 152 RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDV 210
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 324 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 497
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 498 SGKN 509
G++
Sbjct: 150 DGRD 153
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 54.0 bits (124), Expect = 1e-07
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Frame = +2
Query: 431 RCKDNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRR--- 601
+ K NG++ +S +LVG A+TG GKTLA++LP + + N P +
Sbjct: 110 KLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKM 169
Query: 602 --GDGPIALVLAPTRELAQQIQQVAADF 679
G P LVL PTRELA +QVAADF
Sbjct: 170 GYGRSPSVLVLLPTRELA---KQVAADF 194
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +2
Query: 446 GLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIAL 622
G+++ + L + ++++G A+TG+GKTLA+ +P I I RG P+ L
Sbjct: 123 GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCL 182
Query: 623 VLAPTRELAQQIQQ 664
VLAPTRELA+Q+++
Sbjct: 183 VLAPTRELARQVEK 196
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Frame = +2
Query: 437 KDNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINN-QPPIRRGDGP 613
K G+++ + L + ++++G A+TG+GKTLA+ +P I I RG P
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNP 191
Query: 614 IALVLAPTRELAQQIQQ 664
LVLAPTRELA+Q+++
Sbjct: 192 QCLVLAPTRELARQVEK 208
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +2
Query: 437 KDNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAI-VHINNQPPIRRGDGP 613
K+ G Q + + K+++G A+TGSGKTLA+++PA+ + + R G G
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG- 163
Query: 614 IALVLAPTRELAQQIQQVAADFWTH 688
+V+ PTRELA Q + VA + H
Sbjct: 164 -VIVICPTRELAIQTKNVAEELLKH 187
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 51.2 bits (117), Expect = 7e-07
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = +2
Query: 437 KDNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP- 613
KD G + + L K+++ A+TG+GKT+A++LPAI + PP R
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQP 457
Query: 614 --IALVLAPTRELAQQ 655
I LV+ PTRELA Q
Sbjct: 458 PIIVLVVCPTRELASQ 473
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 51.2 bits (117), Expect = 7e-07
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 667
++L+ AQTGSGKT A+ P I I ++R G P+A++L+PTRELA QI
Sbjct: 197 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDE 256
Query: 668 AADF 679
A F
Sbjct: 257 AKKF 260
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +3
Query: 261 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 437
+ PF + +P P ++ + + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 438 KTMGYKEPTPIQAQGWPIAMSGKN*LA 518
+ Y +PTP+Q PI + G++ +A
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMA 201
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 50.8 bits (116), Expect = 9e-07
Identities = 29/77 (37%), Positives = 46/77 (59%)
Frame = +2
Query: 434 CKDNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 613
CK+ G+++ + + ++++G+AQTGSGKT A+ LP I+H + P G
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILHRLAEDPY----GV 127
Query: 614 IALVLAPTRELAQQIQQ 664
ALV+ PTRELA Q+ +
Sbjct: 128 FALVVTPTRELAFQLAE 144
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
FE ++ + K +G ++PTP+Q P ++G++
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRD 97
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +2
Query: 521 AQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 664
A TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ +
Sbjct: 74 APTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYE 122
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +3
Query: 444 MGYKEPTPIQAQGWPIAMSGKN 509
MG++ PT +QAQ P+ +SG++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRD 69
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 667
++L+ AQTGSGKT A+ P I I I R G P+A++L+PTRELA QI
Sbjct: 184 RDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDE 243
Query: 668 AADF 679
A F
Sbjct: 244 ARKF 247
Score = 34.7 bits (76), Expect = 0.065
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +3
Query: 267 PF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 443
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 444 MGYKEPTPIQAQGWPIAMSGKN*LA 518
Y +PTP+Q PI +G++ +A
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMA 188
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 48.8 bits (111), Expect = 4e-06
Identities = 28/80 (35%), Positives = 45/80 (56%)
Frame = +2
Query: 437 KDNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 616
K+ G R + + + ++++G A+TGSGKTLA+++PA V + + +G
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTG 228
Query: 617 ALVLAPTRELAQQIQQVAAD 676
LV+ PTRELA Q VA +
Sbjct: 229 VLVICPTRELAIQSYGVAKE 248
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/82 (24%), Positives = 34/82 (41%)
Frame = +3
Query: 264 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 443
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 444 MGYKEPTPIQAQGWPIAMSGKN 509
MG+ T IQA+ P M G++
Sbjct: 172 MGFARMTQIQAKAIPPLMMGED 193
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 446 GLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIAL 622
G+++ S + K++V A+TGSGKTLAY+LP + + + + ++ P A
Sbjct: 65 GIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAF 124
Query: 623 VLAPTRELAQQI 658
+L P+REL QQ+
Sbjct: 125 ILVPSRELCQQV 136
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +3
Query: 324 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 503
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 504 KN*LA 518
K+ +A
Sbjct: 84 KDVVA 88
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 48.8 bits (111), Expect = 4e-06
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 667
++L+ AQTGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 668 AADF 679
A F
Sbjct: 249 AKKF 252
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 354 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++ +A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 48.8 bits (111), Expect = 4e-06
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 667
++L+ AQTGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 668 AADF 679
A F
Sbjct: 249 AKKF 252
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 354 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++ +A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 48.4 bits (110), Expect = 5e-06
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Frame = +2
Query: 437 KDNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD--G 610
KD G + + L K+++ A+TG+GKT+A++LP+I + PP +
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRP 129
Query: 611 PI-ALVLAPTRELAQQ 655
PI ALV+ PTRELA Q
Sbjct: 130 PILALVICPTRELANQ 145
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 47.6 bits (108), Expect = 9e-06
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 673
K++V A TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAE 111
Query: 674 DF 679
F
Sbjct: 112 PF 113
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 670
K L+ A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A
Sbjct: 148 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQA 206
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +3
Query: 315 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 488
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 489 IAMSGKN*LA 518
A++GK+ LA
Sbjct: 143 AALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 670
K L+ A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A
Sbjct: 11 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQA 69
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 655
K+++ A+TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/66 (34%), Positives = 43/66 (65%)
Frame = +2
Query: 458 TDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 637
TD S++ + + ++++G A+TGSGKTLA+++P + ++ + DG ++++PT
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPT 152
Query: 638 RELAQQ 655
RELA Q
Sbjct: 153 RELAAQ 158
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 46.0 bits (104), Expect = 3e-05
Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 670
K++V A TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 44.8 bits (101), Expect = 6e-05
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Frame = +2
Query: 434 CKDNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHI-----NNQPPIR 598
C+ G + + L + K+++G+AQTGSGKT A+ +P + + +++P
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKG 83
Query: 599 RGDGP--IALVLAPTRELAQQIQQ 664
R P A VL+PTRELA QI +
Sbjct: 84 RRPDPAFFACVLSPTRELAIQIAE 107
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +3
Query: 372 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKD 48
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 44.8 bits (101), Expect = 6e-05
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD-----GPIALVLAPTRELAQQIQQV 667
K +V + TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +V
Sbjct: 150 KSVVLGSHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRV 208
Query: 668 AADFWTH 688
A H
Sbjct: 209 AKSISHH 215
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 44.4 bits (100), Expect = 8e-05
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 5/59 (8%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQ 664
++++ A+TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++
Sbjct: 140 RDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEK 198
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/50 (44%), Positives = 36/50 (72%)
Frame = +2
Query: 506 ELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 655
++V +A+TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q
Sbjct: 67 DVVAMARTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQ 113
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 503
FE N V +K GYK PTPIQ + P+ +SG
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSG 65
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Frame = +2
Query: 443 NGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHI----NNQPPIRRGDG 610
+G+ + + L++ K+ + A+TG+GK++A++LPAI + N+ + +
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAP 405
Query: 611 PIALVLAPTRELAQQI 658
AL+L PTRELA QI
Sbjct: 406 IFALILCPTRELASQI 421
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +3
Query: 339 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 506
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 655
+E A TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 179 RECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Frame = +2
Query: 443 NGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHI----NNQPPIRRGDG 610
+G+ + + L++ K+ + A+TG+GK++A++LPAI + N+ + +
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAP 452
Query: 611 PIALVLAPTRELAQQI 658
L+L PTRELA QI
Sbjct: 453 IFVLILCPTRELASQI 468
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Frame = +2
Query: 500 WKELVGVAQTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVA 670
+K++ A TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVA 110
Query: 671 ADF 679
F
Sbjct: 111 QPF 113
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +3
Query: 357 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRD 206
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/78 (32%), Positives = 41/78 (52%)
Frame = +2
Query: 434 CKDNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 613
C+ G ++ ++ + + ++L A TGSGKT A+ LP + + +P +R
Sbjct: 182 CETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRP--KRVFAT 239
Query: 614 IALVLAPTRELAQQIQQV 667
L+L PTRELA QI +
Sbjct: 240 RVLILTPTRELAVQIHSM 257
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/84 (25%), Positives = 42/84 (50%)
Frame = +2
Query: 440 DNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 619
+ G +R + + ++++ A+ G+GKT A+ +P + I+ + + A
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----A 202
Query: 620 LVLAPTRELAQQIQQVAADFWTHI 691
+++ PTRELA Q QV + H+
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHL 226
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*LKRVPAK 542
FE+ + G+ G++ P+PIQ + PIA++G++ LA K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/84 (25%), Positives = 42/84 (50%)
Frame = +2
Query: 440 DNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 619
+ G +R + + ++++ A+ G+GKT A+ +P + I+ + + A
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----A 202
Query: 620 LVLAPTRELAQQIQQVAADFWTHI 691
+++ PTRELA Q QV + H+
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHL 226
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*LKRVPAK 542
FE+ + G+ G++ P+PIQ + PIA++G++ LA K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQI 658
K + Q+GSGKTLAY++P I + Q + G P +VL PT ELA Q+
Sbjct: 412 KSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +2
Query: 521 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 670
AQTGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 120 AQTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 667
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 667
K L+ A GSGKT ++L + ++ P +R P AL + PTRELA Q +V
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEV 181
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 37.9 bits (84), Expect = 0.007
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 15/73 (20%)
Frame = +2
Query: 491 SYVWKELVGVAQTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALV 625
+Y K+++G A+TGSGKTLA+ LP + + + DG + AL+
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALI 284
Query: 626 LAPTRELAQQIQQ 664
+ PTRELA Q+ +
Sbjct: 285 ITPTRELALQVTE 297
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 36.7 bits (81), Expect = 0.016
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = +2
Query: 440 DNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 619
+ G ++ + + +++ A+ G+GKT A+ +P + I+ + + + A
Sbjct: 171 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQ-----A 225
Query: 620 LVLAPTRELAQQIQQVAAD 676
++L PTRELA Q QV +
Sbjct: 226 VILVPTRELALQTSQVCKE 244
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*LKRVPAK 542
FE+ + +G+ G+++P+PIQ + PIA++G + LA K K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 36.3 bits (80), Expect = 0.021
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = +2
Query: 440 DNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 619
+ G ++ + + +++ A+ G+GKT A+ +P + I+ + + A
Sbjct: 141 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----A 195
Query: 620 LVLAPTRELAQQIQQVAAD 676
++L PTRELA Q QV +
Sbjct: 196 MILVPTRELALQTSQVCKE 214
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*LKRVPAK 542
FE+ + +G+ G+++P+PIQ + PIA++G + LA K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 36.3 bits (80), Expect = 0.021
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = +2
Query: 440 DNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 619
+ G ++ + + +++ A+ G+GKT A+ +P + I+ + + A
Sbjct: 141 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----A 195
Query: 620 LVLAPTRELAQQIQQVAAD 676
++L PTRELA Q QV +
Sbjct: 196 MILVPTRELALQTSQVCKE 214
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*LKRVPAK 542
FE+ + +G+ G+++P+PIQ + PIA++G + LA K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 34.7 bits (76), Expect = 0.065
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +2
Query: 440 DNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI- 616
D+G + + + + +++ A++G GKT ++L + I P G +
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVS 116
Query: 617 ALVLAPTRELAQQIQQVAADFWTHI 691
ALVL TRELA QI F T++
Sbjct: 117 ALVLCHTRELAYQICNEFVRFSTYL 141
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 34.7 bits (76), Expect = 0.065
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +2
Query: 440 DNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI- 616
D+G + + + + +++ A++G GKT ++L + I P G +
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVS 116
Query: 617 ALVLAPTRELAQQIQQVAADFWTHI 691
ALVL TRELA QI F T++
Sbjct: 117 ALVLCHTRELAYQICNEFVRFSTYL 141
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +2
Query: 506 ELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 667
+++ AQ+G+GKT + + ++ + ALVLAPTRELAQQI++V
Sbjct: 80 DVIQQAQSGTGKTATFCSGVLQQLDISLVQCQ-----ALVLAPTRELAQQIEKV 128
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 33.5 bits (73), Expect = 0.15
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +2
Query: 506 ELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 667
+++ AQ+G+GKT + + ++ + ALVLAPTRELAQQI++V
Sbjct: 78 DVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQ-----ALVLAPTRELAQQIEKV 126
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 33.5 bits (73), Expect = 0.15
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Frame = +2
Query: 437 KDNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINN----QPPIRRG 604
+D+G R + + K+++ A+TGSGKT Y+ P I + N R
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNRE 155
Query: 605 DGP-----IALVLAPTRELAQQI 658
+ P I+L+L P L +Q+
Sbjct: 156 ERPFPLKNISLILCPNVMLCEQV 178
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 33.5 bits (73), Expect = 0.15
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +2
Query: 506 ELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 667
+++ AQ+G+GKT + + ++ + ALVLAPTRELAQQI++V
Sbjct: 78 DVIQQAQSGTGKTATFCSGVLQQLDYALLQCQ-----ALVLAPTRELAQQIEKV 126
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 32.7 bits (71), Expect = 0.26
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI 658
TGSGKTLAY+LP + I R A+++AP+REL QI
Sbjct: 156 TGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 503
FEE PD + ++ G+ PT +Q+ P + G
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 384 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
PI+ F++ D V +GV GYK+P+ IQ + + G++ +A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIA 64
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +2
Query: 440 DNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKT--LAYILPAIVHINNQPPIRRGDGP 613
D G ++ L ++++ AQ+G+GKT +A + IV+I+++
Sbjct: 39 DYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQ------ 92
Query: 614 IALVLAPTRELAQQIQQVAADFWTH 688
LVL+P+RELA Q ++ H
Sbjct: 93 -VLVLSPSRELASQTEKTIQAIGAH 116
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 31.9 bits (69), Expect = 0.46
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 506 ELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQIQQVAADFW 682
+++ A++G GKT ++L + I P G + ALVL TRELA QI F
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQICNEFVRFS 55
Query: 683 THI 691
T++
Sbjct: 56 TYL 58
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 732 FRSTTKTHTCYEHKMCVQKSAATC*ICCANSLVGAKTKAIGPSPLRI 592
FRST K + + + ++ ICC N L G T+ + P PL++
Sbjct: 59 FRSTNKFRSSFPQHIFLESP-----ICCGNDLSGDYTQVLAPEPLQM 100
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = +2
Query: 446 GLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 625
G ++ A + ++++ AQ+G+GKT L ++ + AL+
Sbjct: 54 GFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQ-----ALI 108
Query: 626 LAPTRELAQQIQQVAADFWTH 688
L+PTRELA Q ++ H
Sbjct: 109 LSPTRELATQTEKTIQAIGLH 129
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +3
Query: 234 ASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 413
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 414 PDYVQQGVKTM 446
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +3
Query: 234 ASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 413
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 414 PDYVQQGVKTM 446
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 18 SKRIHSLNKHLQLNPKI 68
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 446 GLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIV 571
G+ ++ L+ K+ + +A TGSGK+L + +PA++
Sbjct: 165 GISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALL 206
>At5g25520.2 68418.m03037 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 997
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 434 CKDNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAI 568
CK NG+ ++ S +A SYV + VG A+ SG L Y+ P +
Sbjct: 722 CK-NGISQSQRDSLIEVAKSYVADQRVGYAEPTSGVEL-YLCPTL 764
>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 - Oryza sativa,
PIR:A57676
Length = 1011
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 422 CATRCKDNGLQRTDAYSSSRLADSYVWKELVGVAQ 526
C T + GL+ + Y ++RLA S V KEL+ + +
Sbjct: 966 CLTLVLEVGLRCCEEYPTNRLATSEVAKELISIRE 1000
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 18 SKRIHSLNKHLQLNPKI 68
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
>At5g48950.2 68418.m06055 thioesterase family protein contains Pfam
profile PF03061: thioesterase family protein
Length = 127
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +1
Query: 523 SNGFRQNVGLHLASHCAHKQPTAYSER*WSDCFGLGAYQRVSTTNSAS 666
++GF++ G+HL+ H H +P A E +++ F + + + T + S
Sbjct: 66 ASGFKRVAGIHLSIH--HLRPAALGEIVFAESFPVSVGKNIQTEDLKS 111
>At3g03305.1 68416.m00328 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 743
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 579 TTNRLFGEVMVRLLWSWRLPES*HNKFSKLLQI-FGHTSYV 698
T+N FG + W W + + N+ +++ I GH SYV
Sbjct: 312 TSNCSFGALPAAEFWEWEMGDWRKNRAMRIMAIDRGHVSYV 352
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 9.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 154 ETNYRRICCLLQIWNHRFHGYY 89
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 461
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 462 TPIQAQGWPIAMS 500
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 461
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 462 TPIQAQGWPIAMS 500
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 461
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 462 TPIQAQGWPIAMS 500
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,187,892
Number of Sequences: 28952
Number of extensions: 315094
Number of successful extensions: 1045
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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