Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120520X.Seq
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    27   2.5  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   3.3  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   4.3  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    26   4.3  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   10.0 
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    25   10.0 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   10.0 
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    25   10.0 

>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 289 FFISN*MPSDRHLN*LSSSSKMGKTIFDILKRLMRWLLQINHP 161
           F+  N +P D+ L   +S  +  K IFD+  +L   +L + HP
Sbjct: 727 FYFDNSLPEDQSLLFPASLKRSAKNIFDLAYQL-NGILPVFHP 768


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +3

Query: 39  MPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAY 152
           +P+G  P  +R N+C+ +     +     + P  P  Y
Sbjct: 155 VPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGY 192


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +1

Query: 202 KCQKWFCPFSTKTTI--NSNDDR*AFSWK 282
           KCQ W C F+   TI  +S DD     WK
Sbjct: 289 KCQVWRCRFNVTGTILSSSGDDGCVRLWK 317


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 262 DRHLN*LSSSSKMGKTIFDILKRLMRWLLQINHPSS 155
           +R ++   +S K+GK   +IL  L+R     NHP S
Sbjct: 520 ERTMSNFVNSGKLGKNYTNILCLLLRLRQACNHPQS 555


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 299  KRILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVICD 427
            KR+L+    N   VFN   +   +Q+   +   N +  +V CD
Sbjct: 1103 KRMLLDRKANVTNVFNTIGLPIHQQMAATIFLENLKEFSVYCD 1145


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 461 RNGYTQRLRNYKKHSRTTNPNTFCSRVS 544
           RNG  +R R++ +HS  T  N+  S  S
Sbjct: 292 RNGSIKRWRSFSRHSSATYSNSPSSNFS 319


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 299 KRILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVICDNLKYTA 445
           KRI +P++  Y  + NL   + A QL+  +     E+V+ +CD    TA
Sbjct: 352 KRISLPNSGFYTSLLNLFKSIGAMQLVPSI-----ESVDELCDAFLETA 395


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 276 LEIKKEVSSEF*FQAQPITKRCL 344
           L++ KE + EF  + Q ITK CL
Sbjct: 39  LKLYKEANEEFGEKLQEITKECL 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,217
Number of Sequences: 5004
Number of extensions: 44649
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)